Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G159300.1 | Wheat | nucleus | 96.75 | 96.75 |
| TraesCS6D01G153200.1 | Wheat | nucleus | 95.48 | 95.48 |
| HORVU6Hr1G033310.33 | Barley | cytosol | 78.3 | 72.29 |
| Os02t0558600-01 | Rice | nucleus | 46.29 | 43.17 |
| EES06976 | Sorghum | nucleus | 38.34 | 40.23 |
| Zm00001d024922_P001 | Maize | nucleus | 7.41 | 40.2 |
| Zm00001d016849_P002 | Maize | nucleus | 40.14 | 39.86 |
| GSMUA_Achr6P24150_001 | Banana | nucleus | 18.26 | 22.3 |
| Zm00001d005523_P001 | Maize | cytosol, extracellular, plastid | 6.69 | 17.87 |
| KRH33693 | Soybean | nucleus | 6.33 | 16.43 |
| KRG99370 | Soybean | nucleus | 6.87 | 15.7 |
| VIT_18s0001g05830.t01 | Wine grape | nucleus | 14.65 | 15.52 |
| Solyc02g093720.2.1 | Tomato | nucleus | 13.92 | 15.37 |
| TraesCS3B01G438400.1 | Wheat | nucleus | 15.73 | 15.24 |
| PGSC0003DMT400017939 | Potato | nucleus | 13.56 | 15.12 |
| PGSC0003DMT400004849 | Potato | nucleus | 12.3 | 15.11 |
| PGSC0003DMT400032926 | Potato | nucleus | 13.74 | 14.87 |
| KRH16191 | Soybean | nucleus | 9.76 | 14.59 |
| KRH69438 | Soybean | nucleus | 12.3 | 13.55 |
| Solyc02g067950.2.1 | Tomato | extracellular | 11.75 | 13.1 |
| KRG99221 | Soybean | nucleus | 11.21 | 13.0 |
| KRH07049 | Soybean | nucleus | 11.57 | 12.83 |
| KRH45764 | Soybean | nucleus | 11.03 | 12.66 |
| TraesCS2B01G104800.2 | Wheat | nucleus | 10.85 | 12.42 |
| PGSC0003DMT400058225 | Potato | nucleus | 13.02 | 12.08 |
| KRH57609 | Soybean | nucleus | 13.56 | 12.06 |
| TraesCS1B01G273800.1 | Wheat | nucleus | 15.91 | 12.04 |
| Solyc05g006490.2.1 | Tomato | nucleus | 13.02 | 11.96 |
| PGSC0003DMT400031254 | Potato | nucleus | 13.56 | 11.63 |
| Solyc04g005060.2.1 | Tomato | nucleus | 7.41 | 10.96 |
| Solyc05g014270.2.1 | Tomato | nucleus | 13.02 | 10.81 |
| KRH74704 | Soybean | nucleus | 10.31 | 10.5 |
| KRG97481 | Soybean | nucleus | 12.3 | 10.4 |
| KRG94005 | Soybean | nucleus | 12.3 | 10.33 |
| KRH31410 | Soybean | nucleus | 11.39 | 10.19 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G192000.1 | EnsemblPlantsGene:TraesCS6B01G192000 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF5 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6B:+:226358715..226362876
Molecular Weight (calculated)
60226.3 Da
IEP (calculated)
10.520
GRAVY (calculated)
-0.808
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEVGQPFS GWSHSDSPYN DLCTQDDSVQ KMVLDHGSVS FGRFAEESLS WENRSVFEHN RRQEEISKLT LPGLVAKKKA FFEEYYKRKA QKAKLLTEAT
101: LEERSDGDTL DHSRQEDDSH AVAPEDPVDT APGFSCQPST GVSSSDENKR SEPHGIGYLT FNPLFSRITG SQGIQDEEAS STAQNQHVDG EFRRAMRTSS
201: KHGLNQETVE RKVLAPKHVV STDYGESNVA ASRIILPIAS LKAGVKKQEP RKSIAAAVIN GLTKGAKDPS SCLVQIPRVH LRRNSENMNS EDLKDPFHKR
301: VEMKLRALSD RMSAEKAAAS SRSSPYQNAD RAAISSRSAL CQNTDRVVAP SKSATQASHK FLKEVQPAAT LPRTNFYNKG SSVSHVASSN SSNTGKLATR
401: SSVMPNSPQN NAKPLQAAQV ASKRGTGLTS TSNGSQNKRK QLSTPAASVG NSCTRGSMHI SAPTSARSSS SGIRPYKAAK ALRISNGRNA AVKTEMLQKS
501: TTYETHSVGG RNALSKVTVN GNEQNRKVIS SRDGKRSNLA CKSKPRQERP RWR
101: LEERSDGDTL DHSRQEDDSH AVAPEDPVDT APGFSCQPST GVSSSDENKR SEPHGIGYLT FNPLFSRITG SQGIQDEEAS STAQNQHVDG EFRRAMRTSS
201: KHGLNQETVE RKVLAPKHVV STDYGESNVA ASRIILPIAS LKAGVKKQEP RKSIAAAVIN GLTKGAKDPS SCLVQIPRVH LRRNSENMNS EDLKDPFHKR
301: VEMKLRALSD RMSAEKAAAS SRSSPYQNAD RAAISSRSAL CQNTDRVVAP SKSATQASHK FLKEVQPAAT LPRTNFYNKG SSVSHVASSN SSNTGKLATR
401: SSVMPNSPQN NAKPLQAAQV ASKRGTGLTS TSNGSQNKRK QLSTPAASVG NSCTRGSMHI SAPTSARSSS SGIRPYKAAK ALRISNGRNA AVKTEMLQKS
501: TTYETHSVGG RNALSKVTVN GNEQNRKVIS SRDGKRSNLA CKSKPRQERP RWR
001: MAGEVQDPFN LSLLENSIHS GSVSFGRFEK ESLSWERRSS FSRNIYLEEA ERFSKPGSVT QMRAHFEAHF KKKGIRFPSS VESQTWGEVV HHQTCTEKDE
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL
Arabidopsis Description
MDP40 [Source:UniProtKB/TrEMBL;Acc:A0A178W2Z1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.