CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57609	Soybean	nucleus	64.29	68.01
KRH25750	Soybean	cytosol	5.78	37.25
PGSC0003DMT400032926	Potato	nucleus	24.32	31.31
KRH07049	Soybean	nucleus	23.56	31.06
Solyc02g067950.2.1	Tomato	extracellular	23.25	30.85
AT3G01710.3	Thale cress	nucleus	19.15	30.73
Solyc02g093720.2.1	Tomato	nucleus	22.64	29.74
VIT_14s0219g00090.t01	Wine grape	nucleus	25.53	29.63
Zm00001d024922_P001	Maize	nucleus	4.56	29.41
PGSC0003DMT400017939	Potato	nucleus	21.43	28.43
CDX91933	Canola	nucleus	13.68	27.78
CDY33408	Canola	nucleus	15.65	27.69
Bra000994.1-P	Field mustard	nucleus	14.74	27.48
Bra015186.1-P	Field mustard	nucleus	12.61	27.12
CDX74313	Canola	nucleus	16.41	27.0
CDY32377	Canola	nucleus	11.85	26.44
KRH33693	Soybean	nucleus	7.75	23.94
KRH45764	Soybean	nucleus	14.89	20.33
KRH74704	Soybean	nucleus	16.41	19.89
HORVU2Hr1G014490.1	Barley	plastid	5.47	19.67
KRH31410	Soybean	nucleus	18.39	19.58
KRG99221	Soybean	nucleus	13.98	19.29
KRG99370	Soybean	nucleus	6.99	19.01
KRG97481	Soybean	nucleus	18.54	18.65
KRH69438	Soybean	nucleus	13.98	18.33
TraesCS2B01G104800.2	Wheat	nucleus	13.22	18.01
TraesCS2D01G087000.1	Wheat	nucleus	12.61	17.18
KRH16191	Soybean	nucleus	9.27	16.49
GSMUA_Achr6P03270_001	Banana	nucleus	9.57	15.18
KRH50366	Soybean	nucleus	13.83	14.87
TraesCS3D01G400000.1	Wheat	nucleus	12.61	14.54
EES03998	Sorghum	nucleus	12.46	14.46
TraesCS3B01G438400.1	Wheat	nucleus	12.46	14.36
TraesCS3A01G404700.2	Wheat	nucleus	12.46	14.31
Zm00001d005523_P001	Maize	cytosol, extracellular, plastid	4.41	14.01
GSMUA_Achr6P18450_001	Banana	nucleus	11.09	13.85
GSMUA_Achr7P23570_001	Banana	nucleus	11.09	13.67
Zm00001d016849_P002	Maize	nucleus	11.55	13.64
KRG89293	Soybean	nucleus	13.07	13.48
TraesCS2A01G089100.1	Wheat	nucleus	6.69	13.33
EES06976	Sorghum	nucleus	10.64	13.28
GSMUA_Achr6P24150_001	Banana	nucleus	9.12	13.24
Os12t0273700-01	Rice	nucleus	8.05	13.22
OQU79091	Sorghum	nucleus	8.21	13.08
Zm00001d042598_P003	Maize	mitochondrion	12.46	12.75
Zm00001d023630_P005	Maize	nucleus	8.97	12.66
TraesCS6A01G159300.1	Wheat	nucleus	10.64	12.66
TraesCS6D01G153200.1	Wheat	nucleus	10.64	12.66
Os01t0885300-01	Rice	nucleus	10.79	12.39
HORVU6Hr1G033310.33	Barley	cytosol	11.25	12.35
TraesCS6B01G192000.1	Wheat	nucleus	10.33	12.3
Os02t0558600-01	Rice	nucleus	10.79	11.97
Os05t0420500-01	Rice	nucleus	12.31	11.39
TraesCS1A01G263200.1	Wheat	nucleus	12.61	11.37
HORVU1Hr1G063930.1	Barley	nucleus	12.61	11.37
TraesCS1D01G263300.1	Wheat	nucleus	12.46	11.22
TraesCS1B01G273800.1	Wheat	nucleus	12.01	10.81
EES18249	Sorghum	nucleus	12.16	10.43
Zm00001d038217_P002	Maize	nucleus	11.7	10.21
HORVU2Hr1G014550.1	Barley	cytosol	5.78	6.92

Protein Annotations

EMBL:ACUP02011662	EnsemblPlants:KRG94005	EnsemblPlantsGene:GLYMA_19G055400	EntrezGene:100816784	InterPro:TPX2_C	ncoils:Coil
PANTHER:PTHR31358	PANTHER:PTHR31358:SF12	PFAM:PF06886	ProteinID:KRG94005	ProteinID:KRG94005.1	SEG:seg
UniParc:UPI0006EDBA2D	UniProt:A0A0R0EJG4	MapMan:20.1.5.2	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:9311088..9315893

Molecular Weight (calculated)

72340.2 Da

IEP (calculated)

10.399

GRAVY (calculated)

-0.773

Length

658 amino acids

Sequence
(BLAST)

001: MGDSTCLMQQ PFCYASGISN EASENNPIHA LEQSISFGRF MSESLAWEKW SSFSHNRYVE EAERYSRPGS VAQKKAFFEA HYKKLAAQKA AALLEQANNE
101: AQNNSTGQED EGVIDNDNDT HNLQISPNSE MVVKEEQDAK VLSVTSDEHD VLVRLTASEH DSNSSVEASV TPESNKVEGA EAVMEEVAVV GSSMKVELQS
201: HLEDVGAQKE ESEKLSAIVT PPILTPIVKV SKSDQEVLAS VGKKKPPVSS FKLSKANGTS YLTSTPVKST AAISFKRDNI ATPMSNKPAN ETSKFTTTPV
301: KSTAAISFKR DNIVTPMSNK PANGTSKFTT TPVKSTAAIS FKRDNIVTPM SNKPANGTSK FTTTPVKSTA AISFKRNNIV TPMSNKPATL STADKKRSTP
401: RSVNFTPIRE LNRLTASVMR KFESTRAGAG SSKASKDNST TLRTPTMASK EMQNQSSLTP LTEKKRNKTP LDLSSAPGNH TGGSKWRLLS GENRMRSPLI
501: SSPFSLRTEE RATRRKKKLE EKFNANEAQK EQLHTKLKEK TETEIIRKLR QSFCFKARPL PDFYKERKTS TNETKKDPLT HFGTPKDGRK STPSMAESKT
601: SFPPNRPVLK NSGTKHFLGK SGRTLSHPLT STSMIIPTHE NTSPNIQNGY QTGRNLKY

Best Arabidopsis Sequence Match ( AT3G27350.1 )
(BLAST)

001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE

Arabidopsis Description

Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.