Factsheet for VIT_14s0219g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093720.2.1	Tomato	nucleus	33.16	37.52
Solyc02g067950.2.1	Tomato	extracellular	32.28	36.9
PGSC0003DMT400017939	Potato	nucleus	32.28	36.9
PGSC0003DMT400032926	Potato	nucleus	32.8	36.4
AT3G01710.3	Thale cress	nucleus	24.16	33.41
CDX91933	Canola	nucleus	18.17	31.79
KRH57609	Soybean	nucleus	34.39	31.35
Bra000994.1-P	Field mustard	nucleus	19.4	31.16
CDX74313	Canola	nucleus	21.34	30.25
CDY32377	Canola	nucleus	15.52	29.83
Bra015186.1-P	Field mustard	nucleus	15.87	29.41
KRH07049	Soybean	nucleus	25.75	29.26
CDY33408	Canola	nucleus	18.87	28.76
KRG94005	Soybean	nucleus	29.63	25.53
VIT_01s0026g00960.t01	Wine grape	nucleus	21.69	23.98
VIT_01s0010g02240.t01	Wine grape	nucleus	11.82	18.16
VIT_01s0011g04850.t01	Wine grape	nucleus	16.58	15.85
VIT_18s0001g05830.t01	Wine grape	nucleus	14.11	15.33
VIT_07s0005g05560.t01	Wine grape	mitochondrion, plastid	2.12	14.12

Protein Annotations

ArrayExpress:VIT_14s0219g00090	EMBL:FN594962	EnsemblPlants:VIT_14s0219g00090.t01	EnsemblPlantsGene:VIT_14s0219g00090	EntrezGene:100261110	EntrezGene:LOC100261110
InterPro:TPX2_C	ncoils:Coil	PANTHER:PTHR31358	PANTHER:PTHR31358:SF12	PFAM:PF06886	ProteinID:CBI17700
ProteinID:CBI17700.3	RefSeq:XP_002267994	RefSeq:XP_002267994.2	RefSeq:XP_002267994.3	SEG:seg	unigene:Vvi.5247
UniParc:UPI00015C99A7	UniProt:D7SPX1	wikigene:100261110	wikigene:LOC100261110	MapMan:20.1.5.2	:

Description

No Description!

Coordinates

chr14:+:26388581..26392658

Molecular Weight (calculated)

62567.6 Da

IEP (calculated)

10.272

GRAVY (calculated)

-0.887

Length

567 amino acids

Sequence
(BLAST)

001: MEESACLMHA FSYVSGICHE AKEGNPMHSL GESISFGRFM SESLSWEKWS SFSNNRYVEE AERYARPGSV AQKKAFFEAH YKRIAAKKAA ALLEQANAAE
101: NNAPEAEYEG CVDNAAAKFS QTPISDSNVA VEEQQEVKAI DSEADFRVDS NGYNPNVEVN VLESSKVMAG LGADPVTKDQ VLVENPTKIE SSDKVGDAEN
201: HNKGTELELT RTTQMEKPLL KKNPDPNQEV LASVTKKKPT TPSTKPSVYS RAHKLPSSPT KPTAPFHPRK ENIATPISRK PATESSDKKR STPLSHHLSI
301: NIASAREPTK LSNPVVRKIE TSRGGTSFSK ASKDCSTPLR TPTRAPINGA SKHPSATPSS ENRRVRTPGD PLASGSRTTG SKCRFLPTYC TDPLSALRNK
401: SQSPNFSTSF NLRTEERAAR RKKLEERFNA KETEKVQLQT KIKEKAESEL RKLRQTLCFK ARPLPDFYKE RETLKGQTKK IPATHHESPK PGRKPTTSAV
501: HPQSPKPGRK LTTSTVQGPK PLPPQWPCIK SSGSKHVAEK INQAPNTPLI SVRVITTHEN RSPNIQH

Best Arabidopsis Sequence Match ( AT3G27350.1 )
(BLAST)

001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE

Arabidopsis Description

Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.