Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017939 | Potato | nucleus | 72.18 | 72.18 |
| Solyc02g093720.2.1 | Tomato | nucleus | 52.22 | 51.7 |
| AT3G01710.3 | Thale cress | nucleus | 26.81 | 32.44 |
| VIT_14s0219g00090.t01 | Wine grape | nucleus | 36.9 | 32.28 |
| Zm00001d024922_P001 | Maize | nucleus | 6.45 | 31.37 |
| Bra015186.1-P | Field mustard | nucleus | 18.95 | 30.72 |
| Bra000994.1-P | Field mustard | nucleus | 21.57 | 30.31 |
| CDX91933 | Canola | nucleus | 19.76 | 30.25 |
| CDX74313 | Canola | nucleus | 22.98 | 28.5 |
| CDY33408 | Canola | nucleus | 21.37 | 28.49 |
| CDY32377 | Canola | nucleus | 16.94 | 28.47 |
| KRH07049 | Soybean | nucleus | 28.63 | 28.46 |
| KRH57609 | Soybean | nucleus | 33.06 | 26.37 |
| KRG94005 | Soybean | nucleus | 30.85 | 23.25 |
| HORVU2Hr1G014490.1 | Barley | plastid | 7.66 | 20.77 |
| Solyc05g014270.2.1 | Tomato | nucleus | 23.79 | 17.72 |
| GSMUA_Achr6P24150_001 | Banana | nucleus | 13.91 | 15.23 |
| TraesCS2D01G087000.1 | Wheat | nucleus | 14.72 | 15.11 |
| TraesCS2B01G104800.2 | Wheat | nucleus | 14.11 | 14.49 |
| Zm00001d005523_P001 | Maize | cytosol, extracellular, plastid | 6.05 | 14.49 |
| Os01t0885300-01 | Rice | nucleus | 16.53 | 14.31 |
| Os12t0273700-01 | Rice | nucleus | 11.49 | 14.21 |
| EES06976 | Sorghum | nucleus | 14.72 | 13.85 |
| Zm00001d023630_P005 | Maize | nucleus | 12.7 | 13.52 |
| TraesCS3B01G438400.1 | Wheat | nucleus | 15.32 | 13.31 |
| EES03998 | Sorghum | nucleus | 15.12 | 13.23 |
| TraesCS3D01G400000.1 | Wheat | nucleus | 15.12 | 13.13 |
| TraesCS3A01G404700.2 | Wheat | nucleus | 14.72 | 12.74 |
| GSMUA_Achr7P23570_001 | Banana | nucleus | 13.31 | 12.36 |
| TraesCS2A01G089100.1 | Wheat | nucleus | 8.06 | 12.12 |
| Zm00001d016849_P002 | Maize | nucleus | 13.51 | 12.03 |
| Solyc05g008090.2.1 | Tomato | nucleus | 16.53 | 11.97 |
| TraesCS6A01G159300.1 | Wheat | nucleus | 13.31 | 11.93 |
| Zm00001d042598_P003 | Maize | mitochondrion | 15.32 | 11.82 |
| GSMUA_Achr6P03270_001 | Banana | nucleus | 9.88 | 11.81 |
| Solyc05g006490.2.1 | Tomato | nucleus | 14.31 | 11.79 |
| TraesCS6B01G192000.1 | Wheat | nucleus | 13.1 | 11.75 |
| TraesCS6D01G153200.1 | Wheat | nucleus | 13.1 | 11.75 |
| GSMUA_Achr6P18450_001 | Banana | nucleus | 12.3 | 11.57 |
| OQU79091 | Sorghum | nucleus | 9.48 | 11.38 |
| HORVU6Hr1G033310.33 | Barley | cytosol | 13.51 | 11.19 |
| Os02t0558600-01 | Rice | nucleus | 13.1 | 10.96 |
| Zm00001d038217_P002 | Maize | nucleus | 16.13 | 10.61 |
| HORVU1Hr1G063930.1 | Barley | nucleus | 15.52 | 10.55 |
| Os05t0420500-01 | Rice | nucleus | 14.92 | 10.41 |
| EES18249 | Sorghum | nucleus | 15.93 | 10.3 |
| TraesCS1A01G263200.1 | Wheat | nucleus | 15.12 | 10.27 |
| TraesCS1D01G263300.1 | Wheat | nucleus | 15.12 | 10.26 |
| TraesCS1B01G273800.1 | Wheat | nucleus | 15.12 | 10.26 |
| Solyc04g005060.2.1 | Tomato | nucleus | 7.06 | 9.36 |
| HORVU2Hr1G014550.1 | Barley | cytosol | 5.44 | 4.92 |
Protein Annotations
| EnsemblPlants:Solyc02g067950.2.1 | EnsemblPlantsGene:Solyc02g067950.2 | InterPro:TPX2_C | ncoils:Coil | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF12 |
| PFAM:PF06886 | SEG:seg | UniParc:UPI000276774B | UniProt:K4B7C7 | MapMan:20.1.5.2 | : |
Description
No Description!
Coordinates
chr2:-:38027351..38031410
Molecular Weight (calculated)
54939.0 Da
IEP (calculated)
10.569
GRAVY (calculated)
-0.872
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSACLMHA FSYASALPPN EAKQGNHMHA LGESISFGRF TTESLAWDKW SAFPHKRYVE EAERYAQPGS VAQKKAFFEA HYKKIAAQKA AALLEQENTQ
101: QDTLAVDPNV NSSMEGVADV KEKENVAPLA RVGSLKQPQE TFSGSELSET SYTEKPLLKS SSSKQDDDVT SAMSKKKTAL SSFKSSVHSI KSKIPPSPAR
201: HNMSRLVNKE NNFTPITKNP TSALANEKKS TSKSLSRLIN FTPAKETDKV PPPPPPTFKK ESSKLVSNAA KKCITPLKTP AETSDGAVKH LMTTPSSENR
301: RMETPIHPSA SGSQTTGPKW NILSSVCSKS LTACRNKLQS PSLSTPFLLR TEERAARRKQ KLEEKFNAKE VQKVQLQTKI KEKAEMELRK LRQSFCFRAR
401: PLPKFYKERE TARNHTKKTP VKRPQSPKLG RNPSNSTMQD LASHPTSTYS AKNSSYKYSG KKNCPKPINS HTSSTVMSRD QNASPNIQHQ FGVSPN
101: QDTLAVDPNV NSSMEGVADV KEKENVAPLA RVGSLKQPQE TFSGSELSET SYTEKPLLKS SSSKQDDDVT SAMSKKKTAL SSFKSSVHSI KSKIPPSPAR
201: HNMSRLVNKE NNFTPITKNP TSALANEKKS TSKSLSRLIN FTPAKETDKV PPPPPPTFKK ESSKLVSNAA KKCITPLKTP AETSDGAVKH LMTTPSSENR
301: RMETPIHPSA SGSQTTGPKW NILSSVCSKS LTACRNKLQS PSLSTPFLLR TEERAARRKQ KLEEKFNAKE VQKVQLQTKI KEKAEMELRK LRQSFCFRAR
401: PLPKFYKERE TARNHTKKTP VKRPQSPKLG RNPSNSTMQD LASHPTSTYS AKNSSYKYSG KKNCPKPINS HTSSTVMSRD QNASPNIQHQ FGVSPN
001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE
Arabidopsis Description
Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.