Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G159300.1 | Wheat | nucleus | 96.02 | 96.02 |
| TraesCS6B01G192000.1 | Wheat | nucleus | 95.48 | 95.48 |
| HORVU6Hr1G033310.33 | Barley | cytosol | 79.39 | 73.29 |
| Os02t0558600-01 | Rice | nucleus | 47.02 | 43.84 |
| Zm00001d016849_P002 | Maize | nucleus | 40.69 | 40.4 |
| EES06976 | Sorghum | nucleus | 38.34 | 40.23 |
| Zm00001d024922_P001 | Maize | nucleus | 7.41 | 40.2 |
| GSMUA_Achr6P24150_001 | Banana | nucleus | 18.08 | 22.08 |
| Zm00001d005523_P001 | Maize | cytosol, extracellular, plastid | 7.05 | 18.84 |
| KRH33693 | Soybean | nucleus | 6.69 | 17.37 |
| KRG99370 | Soybean | nucleus | 7.23 | 16.53 |
| TraesCS3D01G400000.1 | Wheat | nucleus | 16.46 | 15.94 |
| VIT_18s0001g05830.t01 | Wine grape | nucleus | 15.01 | 15.9 |
| KRH16191 | Soybean | nucleus | 10.49 | 15.68 |
| Solyc02g093720.2.1 | Tomato | nucleus | 14.1 | 15.57 |
| PGSC0003DMT400004849 | Potato | nucleus | 12.48 | 15.33 |
| PGSC0003DMT400017939 | Potato | nucleus | 13.56 | 15.12 |
| PGSC0003DMT400032926 | Potato | nucleus | 13.92 | 15.07 |
| KRH69438 | Soybean | nucleus | 12.84 | 14.14 |
| KRG99221 | Soybean | nucleus | 12.12 | 14.05 |
| TraesCS2D01G087000.1 | Wheat | nucleus | 11.93 | 13.66 |
| KRH07049 | Soybean | nucleus | 11.93 | 13.23 |
| Solyc02g067950.2.1 | Tomato | extracellular | 11.75 | 13.1 |
| KRH45764 | Soybean | nucleus | 11.21 | 12.86 |
| KRH57609 | Soybean | nucleus | 13.92 | 12.38 |
| Solyc05g006490.2.1 | Tomato | nucleus | 13.2 | 12.13 |
| PGSC0003DMT400058225 | Potato | nucleus | 13.02 | 12.08 |
| TraesCS1D01G263300.1 | Wheat | nucleus | 15.73 | 11.9 |
| PGSC0003DMT400031254 | Potato | nucleus | 13.56 | 11.63 |
| KRH74704 | Soybean | nucleus | 11.03 | 11.23 |
| Solyc04g005060.2.1 | Tomato | nucleus | 7.59 | 11.23 |
| Solyc05g014270.2.1 | Tomato | nucleus | 13.02 | 10.81 |
| KRG94005 | Soybean | nucleus | 12.66 | 10.64 |
| KRG97481 | Soybean | nucleus | 12.3 | 10.4 |
| KRH31410 | Soybean | nucleus | 11.39 | 10.19 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G153200.1 | EnsemblPlantsGene:TraesCS6D01G153200 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF5 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6D:+:127183625..127188657
Molecular Weight (calculated)
60200.3 Da
IEP (calculated)
10.400
GRAVY (calculated)
-0.773
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEVGQPFS GWTHSDSPYN DLCTQDDSVQ KMVLDHGSVS FGRFAEESLS WENRSVFEHN RRQEEISKLT LPGLVAQKKA FFEEYYKRKA QKAKLLTEAT
101: LEERSDGDTL DHSMQEDNSH AVVPEDPVDT APSSSCQPST GVSSSDENKR YEPHGLGYLT FNPLFSRITG SQGIQDEEAS STAQNQHVDG EFRCATRTSS
201: KHGLNQETVE RKVLAPKHVV STDYGESNVA ASRISLPIAS LKAGVKKQEP RKSIAAAVIN GLTKGAKDPS SCLIQIPRVH LRRNSENMNS EGLKDPFHKR
301: VEMKLRALSD RMSAEKAAAS SRSSPYQNAD RAAISSRSAL CQNTDRVIAP SKSATQASHK FLKEVQPAAT LPRTNFYNKG LSVSHVASSN SSNTGKLATR
401: SSVMPNSLQN NAKPLQAAQV ASKRGAGLTS TSNGSQNKRK QLSTPAASVG SSQIRGSMHI SAPTSARSSS SGIRPYKAAK APRISNGRNA AVKTEMMQKS
501: TTYETHSVGG RNALSEVTVN GNEQNRKVIL SRDGKRSNLA CKSKPRQERP RWR
101: LEERSDGDTL DHSMQEDNSH AVVPEDPVDT APSSSCQPST GVSSSDENKR YEPHGLGYLT FNPLFSRITG SQGIQDEEAS STAQNQHVDG EFRCATRTSS
201: KHGLNQETVE RKVLAPKHVV STDYGESNVA ASRISLPIAS LKAGVKKQEP RKSIAAAVIN GLTKGAKDPS SCLIQIPRVH LRRNSENMNS EGLKDPFHKR
301: VEMKLRALSD RMSAEKAAAS SRSSPYQNAD RAAISSRSAL CQNTDRVIAP SKSATQASHK FLKEVQPAAT LPRTNFYNKG LSVSHVASSN SSNTGKLATR
401: SSVMPNSLQN NAKPLQAAQV ASKRGAGLTS TSNGSQNKRK QLSTPAASVG SSQIRGSMHI SAPTSARSSS SGIRPYKAAK APRISNGRNA AVKTEMMQKS
501: TTYETHSVGG RNALSEVTVN GNEQNRKVIL SRDGKRSNLA CKSKPRQERP RWR
001: MGESICLVRS FSQPSEFSSR EINEVVPNRV LTESVSFGRY ANETLAWARW SAFTQNRYLE EVERFTKPGS VAEKKAFFEA HFKNRASGKA ATQTKKIEQV
101: KVKDSVEIVC DIPKDILVDS EVPLAVNREV SSNEVDSVVP SISVIDETGK VENLKSVVVP DEGNSTSLSK ERPPSSSGSK VSSSKLESSV VIELDHSLKN
201: TKKESSSSST RSLSASKNRS RSPPEPIHMS ISCVSSSNTE KTIVGRPQNG SRSAVKADKK KRSGPSSVHM SLNFASSTLR TTKEAPKTLA RNSTTQGTTS
301: TNARNKLFPK INEPTGALKS CKRPLSQTSK DGSTNASAVT LPRLPLLSNL LSENKRKNIS VRSSVSCRIS NNEQRKPSVG CENLSTHSRT KAKSLTVSSP
401: FVFRSDERAE KRKEFFKKVE EKNKKEKEDK FSCGFKANQN TNLASEEHKN PQVGGFQVTP MTLTSPRFRR NQTPGKENIK KPHQTPHKAS SMKIINTKKV
501: VMEKHKSSKI HPSSKQQTTK RTQENMSPNI LQN
101: KVKDSVEIVC DIPKDILVDS EVPLAVNREV SSNEVDSVVP SISVIDETGK VENLKSVVVP DEGNSTSLSK ERPPSSSGSK VSSSKLESSV VIELDHSLKN
201: TKKESSSSST RSLSASKNRS RSPPEPIHMS ISCVSSSNTE KTIVGRPQNG SRSAVKADKK KRSGPSSVHM SLNFASSTLR TTKEAPKTLA RNSTTQGTTS
301: TNARNKLFPK INEPTGALKS CKRPLSQTSK DGSTNASAVT LPRLPLLSNL LSENKRKNIS VRSSVSCRIS NNEQRKPSVG CENLSTHSRT KAKSLTVSSP
401: FVFRSDERAE KRKEFFKKVE EKNKKEKEDK FSCGFKANQN TNLASEEHKN PQVGGFQVTP MTLTSPRFRR NQTPGKENIK KPHQTPHKAS SMKIINTKKV
501: VMEKHKSSKI HPSSKQQTTK RTQENMSPNI LQN
Arabidopsis Description
TPX2 (Targeting protein for Xklp2) protein family [Source:UniProtKB/TrEMBL;Acc:Q84JG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.