Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G089100.1 | Wheat | nucleus | 40.79 | 59.7 |
| TraesCS2B01G104800.2 | Wheat | nucleus | 54.24 | 54.24 |
| HORVU2Hr1G014550.1 | Barley | cytosol | 41.82 | 36.79 |
| OQU79091 | Sorghum | nucleus | 26.09 | 30.51 |
| Zm00001d023630_P005 | Maize | nucleus | 27.74 | 28.76 |
| Os12t0273700-01 | Rice | nucleus | 22.98 | 27.68 |
| KRG99370 | Soybean | nucleus | 9.32 | 18.59 |
| VIT_01s0010g02240.t01 | Wine grape | nucleus | 13.04 | 17.07 |
| KRH16191 | Soybean | nucleus | 12.22 | 15.95 |
| Solyc02g093720.2.1 | Tomato | nucleus | 16.15 | 15.57 |
| KRH33693 | Soybean | nucleus | 6.63 | 15.02 |
| KRH07049 | Soybean | nucleus | 15.32 | 14.83 |
| Solyc02g067950.2.1 | Tomato | extracellular | 15.11 | 14.72 |
| PGSC0003DMT400032926 | Potato | nucleus | 15.53 | 14.68 |
| KRH57609 | Soybean | nucleus | 17.81 | 13.83 |
| PGSC0003DMT400017939 | Potato | nucleus | 14.08 | 13.71 |
| KRG99221 | Soybean | nucleus | 13.04 | 13.21 |
| KRH69438 | Soybean | nucleus | 13.66 | 13.15 |
| AT3G26050.1 | Thale cress | nucleus | 14.49 | 13.13 |
| KRH74704 | Soybean | nucleus | 14.7 | 13.08 |
| CDX99732 | Canola | nucleus | 14.29 | 12.92 |
| KRG94005 | Soybean | nucleus | 17.18 | 12.61 |
| PGSC0003DMT400004849 | Potato | nucleus | 11.59 | 12.44 |
| KRH45764 | Soybean | nucleus | 12.22 | 12.24 |
| CDY40987 | Canola | nucleus | 14.49 | 12.17 |
| Bra036350.1-P | Field mustard | nucleus | 13.87 | 12.03 |
| TraesCS6D01G153200.1 | Wheat | nucleus | 13.66 | 11.93 |
| GSMUA_Achr6P03270_001 | Banana | nucleus | 10.14 | 11.81 |
| TraesCS3D01G400000.1 | Wheat | nucleus | 13.87 | 11.73 |
| KRH31410 | Soybean | nucleus | 14.49 | 11.33 |
| KRG97481 | Soybean | nucleus | 14.49 | 10.7 |
| PGSC0003DMT400031254 | Potato | nucleus | 13.87 | 10.39 |
| Solyc05g014270.2.1 | Tomato | nucleus | 13.25 | 9.61 |
| PGSC0003DMT400058225 | Potato | nucleus | 11.8 | 9.56 |
| Solyc05g006490.2.1 | Tomato | nucleus | 11.59 | 9.3 |
| TraesCS1D01G263300.1 | Wheat | nucleus | 12.01 | 7.93 |
| Solyc04g005060.2.1 | Tomato | nucleus | 4.76 | 6.15 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G087000.1 | EnsemblPlantsGene:TraesCS2D01G087000 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF27 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr2D:+:37465580..37468957
Molecular Weight (calculated)
52661.7 Da
IEP (calculated)
6.170
GRAVY (calculated)
-0.950
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAEPDQPPS PPPPERTASP ERDALRSDDR DWKAEMMSAL GESVSFGRFL AEPLEWGRWS AFEHNRYLEE AAGQSRPGSV AQKKAFFEEH YARKRKSADV
101: DDEGHDADAD GADGGGGEAW SADSSCMTDE PAGEEETGGV DSGAPEDCGA VVAAAVPPGE APQELKAVLD GAASSCRLDS TDEQRDVQVA EARKGLQLDT
201: ECVLAAVDAV EKQPLQESSI VNQGVADSVE KKRHPMSSLF QKPVEFSSPP SGKKVPSSSA KRRSTLRPAK ENSSPFPATD SNKQEETSVA QKGSILGTLN
301: FRRCEIGNPA SRSRNLGSTI ASRISQLESA SRPEKDIHPK VNKQRRTSKG FCKGIPEAAS FTTQQPEQRS PYVSVTRVKE KLFGSTSPPP HPETSVAKEN
401: MGKANDEPEL KEMHQSVRFK ARSLPNFYWR SKESKDSRQG TRETHQNPPH SDHRLNDDAS DPHGMTRGAS KDKQICCFPL IRR
101: DDEGHDADAD GADGGGGEAW SADSSCMTDE PAGEEETGGV DSGAPEDCGA VVAAAVPPGE APQELKAVLD GAASSCRLDS TDEQRDVQVA EARKGLQLDT
201: ECVLAAVDAV EKQPLQESSI VNQGVADSVE KKRHPMSSLF QKPVEFSSPP SGKKVPSSSA KRRSTLRPAK ENSSPFPATD SNKQEETSVA QKGSILGTLN
301: FRRCEIGNPA SRSRNLGSTI ASRISQLESA SRPEKDIHPK VNKQRRTSKG FCKGIPEAAS FTTQQPEQRS PYVSVTRVKE KLFGSTSPPP HPETSVAKEN
401: MGKANDEPEL KEMHQSVRFK ARSLPNFYWR SKESKDSRQG TRETHQNPPH SDHRLNDDAS DPHGMTRGAS KDKQICCFPL IRR
001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE
Arabidopsis Description
Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.