Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33693 | Soybean | nucleus | 10.36 | 20.19 |
| KRG99370 | Soybean | nucleus | 11.08 | 19.01 |
| CDY25766 | Canola | nucleus | 13.73 | 15.36 |
| AT1G23060.1 | Thale cress | nucleus | 13.01 | 14.71 |
| KRH45764 | Soybean | nucleus | 16.63 | 14.32 |
| KRH16191 | Soybean | nucleus | 12.53 | 14.05 |
| KRG99221 | Soybean | nucleus | 15.9 | 13.84 |
| KRH74704 | Soybean | nucleus | 17.59 | 13.44 |
| PGSC0003DMT400004849 | Potato | nucleus | 14.46 | 13.33 |
| VIT_01s0010g02240.t01 | Wine grape | nucleus | 11.33 | 12.74 |
| HORVU2Hr1G014490.1 | Barley | plastid | 5.54 | 12.57 |
| KRH69438 | Soybean | nucleus | 14.94 | 12.35 |
| OQU79091 | Sorghum | nucleus | 12.29 | 12.35 |
| Zm00001d023630_P005 | Maize | nucleus | 12.77 | 11.37 |
| PGSC0003DMT400032926 | Potato | nucleus | 13.73 | 11.15 |
| Solyc02g093720.2.1 | Tomato | nucleus | 13.01 | 10.78 |
| GSMUA_Achr6P24150_001 | Banana | nucleus | 11.57 | 10.6 |
| KRH07049 | Soybean | nucleus | 12.29 | 10.22 |
| TraesCS2D01G087000.1 | Wheat | nucleus | 11.81 | 10.14 |
| CDY12493 | Canola | nucleus | 7.47 | 9.9 |
| Solyc02g067950.2.1 | Tomato | extracellular | 11.81 | 9.88 |
| KRH57609 | Soybean | nucleus | 14.7 | 9.81 |
| KRG94005 | Soybean | nucleus | 15.18 | 9.57 |
| Os12t0273700-01 | Rice | nucleus | 9.16 | 9.48 |
| PGSC0003DMT400058225 | Potato | nucleus | 13.49 | 9.4 |
| KRG97481 | Soybean | nucleus | 14.22 | 9.02 |
| PGSC0003DMT400031254 | Potato | nucleus | 13.98 | 8.99 |
| GSMUA_Achr6P18450_001 | Banana | nucleus | 11.33 | 8.92 |
| TraesCS2B01G104800.2 | Wheat | nucleus | 10.36 | 8.9 |
| KRH31410 | Soybean | nucleus | 13.01 | 8.74 |
| Solyc05g006490.2.1 | Tomato | nucleus | 12.53 | 8.64 |
| GSMUA_Achr7P23570_001 | Banana | nucleus | 11.08 | 8.61 |
| Solyc04g005060.2.1 | Tomato | nucleus | 7.47 | 8.29 |
| PGSC0003DMT400017939 | Potato | nucleus | 9.88 | 8.27 |
| Solyc05g014270.2.1 | Tomato | nucleus | 12.53 | 7.81 |
| Bra012357.1-P | Field mustard | nucleus | 6.02 | 7.65 |
| TraesCS2A01G089100.1 | Wheat | nucleus | 5.3 | 6.67 |
| HORVU2Hr1G014550.1 | Barley | cytosol | 4.1 | 3.1 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P03270_001 | EnsemblPlants:GSMUA_Achr6T03270_001 | EnsemblPlantsGene:GSMUA_Achr6G03270_001 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF28 | UniParc:UPI000295E731 |
| UniProt:M0T3S5 | MapMan:35.2 | : | : | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G03270_001]
Coordinates
chr6:-:2223369..2225242
Molecular Weight (calculated)
47927.9 Da
IEP (calculated)
7.226
GRAVY (calculated)
-0.917
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWERRSSFS HNRYLEEVEK YATPGSVTQK KAYFEAHFKK KPLLHHTFPG FQSEAKLQFA EDCAGNHTWN VDDSVECGDD GQVEYTFFEA PSVSGEHEVT
101: KCEQEEVLSP NFSREYTPWN NEELSDRGAF DYGEAYQVQS NITPQDGNDM QIVAKENHEH ETSSHQELLD GQEFSSKIPS DVKNKTPVLN KMERMSTEVP
201: EKVEKKFAKG KLRNQLPDSQ TSRKPSTYKS SHSAGKTFPK KLVEVERGDT EKMQPQQRFP ARISRSSLDS KNQKAVNNWH FCVTAFFLFD GKCLLQDSEK
301: LKARVGEEKR SEKCLSGQMV IHVLDPLPGK CQTDIQQSAD RCARVPLSDQ TKVKHRADAF KFRSDQRAEK RKEARIHYNL FLYFSCYYIL DHWYFTQSFA
401: LVLHEIGRKD ACERG
101: KCEQEEVLSP NFSREYTPWN NEELSDRGAF DYGEAYQVQS NITPQDGNDM QIVAKENHEH ETSSHQELLD GQEFSSKIPS DVKNKTPVLN KMERMSTEVP
201: EKVEKKFAKG KLRNQLPDSQ TSRKPSTYKS SHSAGKTFPK KLVEVERGDT EKMQPQQRFP ARISRSSLDS KNQKAVNNWH FCVTAFFLFD GKCLLQDSEK
301: LKARVGEEKR SEKCLSGQMV IHVLDPLPGK CQTDIQQSAD RCARVPLSDQ TKVKHRADAF KFRSDQRAEK RKEARIHYNL FLYFSCYYIL DHWYFTQSFA
401: LVLHEIGRKD ACERG
001: MAGEVQDPFN LSLLENSIHS GSVSFGRFEK ESLSWERRSS FSRNIYLEEA ERFSKPGSVT QMRAHFEAHF KKKGIRFPSS VESQTWGEVV HHQTCTEKDE
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL
Arabidopsis Description
MDP40 [Source:UniProtKB/TrEMBL;Acc:A0A178W2Z1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.