Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12493 | Canola | nucleus | 26.91 | 28.11 |
| AT1G23060.1 | Thale cress | nucleus | 19.27 | 17.17 |
| Bra033005.1-P | Field mustard | nucleus | 8.56 | 10.04 |
| Bra025552.1-P | Field mustard | nucleus | 7.95 | 8.81 |
| Bra025270.1-P | Field mustard | nucleus | 6.42 | 8.3 |
| Bra016318.1-P | Field mustard | nucleus | 12.23 | 8.2 |
| Bra016236.1-P | Field mustard | nucleus | 11.93 | 8.09 |
| Bra024641.1-P | Field mustard | nucleus | 12.23 | 7.92 |
| Bra000994.1-P | Field mustard | nucleus | 8.26 | 7.65 |
| Bra015186.1-P | Field mustard | nucleus | 7.03 | 7.52 |
| Bra028471.1-P | Field mustard | nucleus | 6.42 | 6.89 |
| Bra016172.1-P | Field mustard | nucleus | 9.79 | 6.65 |
| GSMUA_Achr6P03270_001 | Banana | nucleus | 7.65 | 6.02 |
| Bra036350.1-P | Field mustard | nucleus | 9.79 | 5.75 |
Protein Annotations
Description
AT1G23060 (E=8e-066) | unknown protein
Coordinates
chrA07:+:8257450..8258607
Molecular Weight (calculated)
35962.1 Da
IEP (calculated)
10.454
GRAVY (calculated)
-0.886
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAHFEAHFK KKGIKLPSSV EAQTWGEVAQ HHQQTASEKE ENLWESMSQC SHYSYELDKC DKEKSSFGDS CLSYESYDDH SSLSVASEKI GIGCSERSVE
101: DKAEMSFPSA TALKSLKNDR KATPSYAKTT KTTTKKDVVI AKGSSSCNTK TSFDTKRGKE MKPALIVKSN ASQAPVTKKT ESLTPLAANK FRSKNTFGSA
201: MKERTATNGF SSRSSERVEK RKEENVEAIV QKSLNFKARP VLLARPQDTS IGQEKVRKDA QAHSSKASSN RSLANGAAKS KLNINKQKVD TQRSLTGIRP
301: NSRDQTAKNN ANGRSLAVRR AAVEVAL
101: DKAEMSFPSA TALKSLKNDR KATPSYAKTT KTTTKKDVVI AKGSSSCNTK TSFDTKRGKE MKPALIVKSN ASQAPVTKKT ESLTPLAANK FRSKNTFGSA
201: MKERTATNGF SSRSSERVEK RKEENVEAIV QKSLNFKARP VLLARPQDTS IGQEKVRKDA QAHSSKASSN RSLANGAAKS KLNINKQKVD TQRSLTGIRP
301: NSRDQTAKNN ANGRSLAVRR AAVEVAL
001: MRAHFEAHFK KKGIRFPSSV ESQTWGEVVH HQTCTEKDEN LWENTSQFGD SCVSFDETIL VNSDDDVHTS ISVALERTDI GRIEDEKETK SSSSATRSKP
101: LKNVQKARPY SATNKDSTKK HVVIPKGYSP SSNAKTSVDT KRQKELKPKR IVETVACQAP ATSKKTEILT PLLATREKKT STNGFSLRSN ERAEKKKEEK
201: VEAVVRKALN LKARPLPKST QARPQHTSTG QAKAKAKARD DHSSTASCDR SLTNRMAKSK VIINKQKADM QRSLNGIRPK TSDQTARNST NIRSLAVRRS
301: AVQVAL
101: LKNVQKARPY SATNKDSTKK HVVIPKGYSP SSNAKTSVDT KRQKELKPKR IVETVACQAP ATSKKTEILT PLLATREKKT STNGFSLRSN ERAEKKKEEK
201: VEAVVRKALN LKARPLPKST QARPQHTSTG QAKAKAKARD DHSSTASCDR SLTNRMAKSK VIINKQKADM QRSLNGIRPK TSDQTARNST NIRSLAVRRS
301: AVQVAL
Arabidopsis Description
MDP40 [Source:UniProtKB/TrEMBL;Acc:A0A178W2Z1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.