Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16238 | Canola | nucleus | 58.61 | 58.5 |
| AT1G24160.1 | Thale cress | nucleus | 52.28 | 48.89 |
| Bra016318.1-P | Field mustard | nucleus | 40.4 | 41.8 |
| Bra016236.1-P | Field mustard | nucleus | 37.03 | 38.8 |
| KRH45764 | Soybean | nucleus | 28.32 | 29.67 |
| KRH69438 | Soybean | nucleus | 29.11 | 29.28 |
| KRH33693 | Soybean | nucleus | 11.88 | 28.17 |
| VIT_01s0026g00960.t01 | Wine grape | nucleus | 28.32 | 27.88 |
| PGSC0003DMT400004849 | Potato | nucleus | 23.96 | 26.89 |
| KRG99221 | Soybean | nucleus | 25.15 | 26.62 |
| KRH74704 | Soybean | nucleus | 28.12 | 26.15 |
| KRG99370 | Soybean | nucleus | 11.68 | 24.38 |
| KRH16191 | Soybean | nucleus | 17.23 | 23.51 |
| Bra025270.1-P | Field mustard | nucleus | 11.49 | 22.92 |
| Bra028471.1-P | Field mustard | nucleus | 12.67 | 20.98 |
| Bra025552.1-P | Field mustard | nucleus | 11.68 | 20.0 |
| Bra000994.1-P | Field mustard | nucleus | 13.66 | 19.55 |
| Bra015186.1-P | Field mustard | nucleus | 11.49 | 18.95 |
| Bra016172.1-P | Field mustard | nucleus | 17.43 | 18.3 |
| Bra033005.1-P | Field mustard | nucleus | 10.1 | 18.28 |
| Solyc05g006490.2.1 | Tomato | nucleus | 20.99 | 17.61 |
| PGSC0003DMT400058225 | Potato | nucleus | 19.01 | 16.11 |
| Solyc04g005060.2.1 | Tomato | nucleus | 11.88 | 16.04 |
| Bra036350.1-P | Field mustard | nucleus | 16.04 | 14.54 |
| Bra012357.1-P | Field mustard | nucleus | 7.92 | 12.23 |
Protein Annotations
Description
AT1G24160 (E=1e-106) | unknown protein
Coordinates
chrA09:+:23864393..23866421
Molecular Weight (calculated)
55264.7 Da
IEP (calculated)
10.144
GRAVY (calculated)
-0.843
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDMQVGVAN IDDKGFYGMM EDKPGASSSP TLQVSVSFGR FENDSLSWEK FSAFSPNKYL EEVGKCATPG SVAQKKAYFE AHYKKIAERK AEIMDQEKLM
101: DNKNASFRSV VTDQGSTEGG SVTESVVDTE EDKHVTDIAA EVKELTVDDV NEDAIIVKEC QSLVNEVKEE VKNSVDSPRL EKPEESALVE EKPEEVLLMD
201: EKEKTEIRED VSENVDTTGK TDETPKKEME KEKTQKLIKK GGNVGVNRTR SSPKPEQVRT KPTTNKIVTS KKTPPSKEVK NMIKPTKKPA APISKAPPGF
301: STPRVYKPAS KLPSLSTSQS SVKKEKASSL LRNKPTAPKS LHMSMSLGPS SASDPSALTS TRKSLIMERM GDKDIVKRAF KSFQKSYDLD ASVDKQKPAL
401: KQNPAKSTSI PSVATRQKDN TRPAKASGIE KRISTSAHGS ASRGLKSNVT AQKELSKSGA RPVEKTRLQK NPKAGVVDAK TLKESMNPKA KPVRTLPKVS
501: SDKML
101: DNKNASFRSV VTDQGSTEGG SVTESVVDTE EDKHVTDIAA EVKELTVDDV NEDAIIVKEC QSLVNEVKEE VKNSVDSPRL EKPEESALVE EKPEEVLLMD
201: EKEKTEIRED VSENVDTTGK TDETPKKEME KEKTQKLIKK GGNVGVNRTR SSPKPEQVRT KPTTNKIVTS KKTPPSKEVK NMIKPTKKPA APISKAPPGF
301: STPRVYKPAS KLPSLSTSQS SVKKEKASSL LRNKPTAPKS LHMSMSLGPS SASDPSALTS TRKSLIMERM GDKDIVKRAF KSFQKSYDLD ASVDKQKPAL
401: KQNPAKSTSI PSVATRQKDN TRPAKASGIE KRISTSAHGS ASRGLKSNVT AQKELSKSGA RPVEKTRLQK NPKAGVVDAK TLKESMNPKA KPVRTLPKVS
501: SDKML
001: MGDMQVGVAT IDDKGFYGLM EDTQVKAVAS SNPSLQVSVS FGRFENDSLS WEKFSAFSPN KYLEEVGKCA TPGSVAQKKA YFEAHYKKIA ERKAEIIDQE
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
Arabidopsis Description
F3I6.9 protein [Source:UniProtKB/TrEMBL;Acc:O48683]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.