Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46410 | Canola | cytosol | 14.14 | 42.33 |
| AT1G24160.1 | Thale cress | nucleus | 46.72 | 42.22 |
| Bra024641.1-P | Field mustard | nucleus | 41.8 | 40.4 |
| Bra016236.1-P | Field mustard | nucleus | 34.43 | 34.85 |
| KRH33693 | Soybean | nucleus | 12.7 | 29.11 |
| KRG99221 | Soybean | nucleus | 27.25 | 27.88 |
| KRH45764 | Soybean | nucleus | 27.46 | 27.8 |
| VIT_01s0026g00960.t01 | Wine grape | nucleus | 28.48 | 27.1 |
| KRH69438 | Soybean | nucleus | 27.46 | 26.69 |
| PGSC0003DMT400004849 | Potato | nucleus | 22.95 | 24.89 |
| KRH74704 | Soybean | nucleus | 27.66 | 24.86 |
| Bra025552.1-P | Field mustard | nucleus | 14.55 | 24.07 |
| KRG99370 | Soybean | nucleus | 10.86 | 21.9 |
| Bra025270.1-P | Field mustard | nucleus | 11.27 | 21.74 |
| Bra000994.1-P | Field mustard | nucleus | 15.37 | 21.25 |
| KRH16191 | Soybean | nucleus | 15.98 | 21.08 |
| Bra028471.1-P | Field mustard | nucleus | 12.7 | 20.33 |
| Bra033005.1-P | Field mustard | nucleus | 11.07 | 19.35 |
| Bra015186.1-P | Field mustard | nucleus | 11.27 | 17.97 |
| Solyc05g006490.2.1 | Tomato | nucleus | 20.08 | 16.28 |
| Solyc04g005060.2.1 | Tomato | nucleus | 12.3 | 16.04 |
| Bra016172.1-P | Field mustard | nucleus | 15.78 | 16.01 |
| PGSC0003DMT400058225 | Potato | nucleus | 17.62 | 14.43 |
| Bra012357.1-P | Field mustard | nucleus | 8.2 | 12.23 |
| Bra036350.1-P | Field mustard | nucleus | 13.52 | 11.85 |
Protein Annotations
Description
AT1G24160 (E=7e-086) | unknown protein
Coordinates
chrA08:+:17873210..17875170
Molecular Weight (calculated)
54041.2 Da
IEP (calculated)
10.162
GRAVY (calculated)
-0.846
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEMQVGVAT IDDKGLYGLM EDKPVASLNP SLQVSVSFGR FENDILSWEK FSAFSPNKYL EEVGKFATPG SVAQKKAYFE AHYKKIAEKK AEIIDHEKQM
101: DKNASFRSVV TNQGSMEGEI DEECNGQFTC EEDKHVTDIA SEVKEVNEET IIVKECQSSV DQVKEEVDNS LDSPKLEIVE EVALMEEKPE EVLQIGEKDV
201: SNETPVKEME TEKNSKLTKK DVNARINRTR NSPKVRTKPT TNKIVTSKKS PPSKEIKNMM KPTKKPAPPI SKPSPGLSTP RVYKPVSKTT SLSTSQSSVK
301: KENVSSSLLG NKQTAPRSLH MSMSLGPSAS DPTSTRRSLI MERMGDKDIV KRAFRTFQKS YDFTSSVDKQ KPALKQNLAK ATSVPSVATR QKENGRPTKS
401: SHLEKRSDSS ASRSSSFGFK SNNTSENNQK ELSKSGARPV EKTRLLKNSK AGVIDAKTRR DSLKPKAKPM QVSLPVRSLP KGSSEKVL
101: DKNASFRSVV TNQGSMEGEI DEECNGQFTC EEDKHVTDIA SEVKEVNEET IIVKECQSSV DQVKEEVDNS LDSPKLEIVE EVALMEEKPE EVLQIGEKDV
201: SNETPVKEME TEKNSKLTKK DVNARINRTR NSPKVRTKPT TNKIVTSKKS PPSKEIKNMM KPTKKPAPPI SKPSPGLSTP RVYKPVSKTT SLSTSQSSVK
301: KENVSSSLLG NKQTAPRSLH MSMSLGPSAS DPTSTRRSLI MERMGDKDIV KRAFRTFQKS YDFTSSVDKQ KPALKQNLAK ATSVPSVATR QKENGRPTKS
401: SHLEKRSDSS ASRSSSFGFK SNNTSENNQK ELSKSGARPV EKTRLLKNSK AGVIDAKTRR DSLKPKAKPM QVSLPVRSLP KGSSEKVL
001: MGDMQVGVAT IDDKGFYGLM EDTQVKAVAS SNPSLQVSVS FGRFENDSLS WEKFSAFSPN KYLEEVGKCA TPGSVAQKKA YFEAHYKKIA ERKAEIIDQE
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
Arabidopsis Description
F3I6.9 protein [Source:UniProtKB/TrEMBL;Acc:O48683]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.