Factsheet for PGSC0003DMT400004849

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005060.2.1	Tomato	nucleus	38.22	45.99
CDY46410	Canola	cytosol	11.33	31.29
KRG99221	Soybean	nucleus	27.11	25.58
VIT_01s0026g00960.t01	Wine grape	nucleus	28.44	24.95
KRG99370	Soybean	nucleus	13.11	24.38
KRH69438	Soybean	nucleus	27.11	24.3
Bra024641.1-P	Field mustard	nucleus	26.89	23.96
Zm00001d024922_P001	Maize	nucleus	5.33	23.53
KRH33693	Soybean	nucleus	11.11	23.47
CDY16238	Canola	nucleus	26.22	23.32
Bra016318.1-P	Field mustard	nucleus	24.89	22.95
CDY11620	Canola	nucleus	24.67	22.65
KRH45764	Soybean	nucleus	24.22	22.61
CDY14672	Canola	nucleus	24.67	22.38
AT1G70100.3	Thale cress	nucleus	24.67	22.02
Bra016236.1-P	Field mustard	nucleus	23.11	21.58
KRH74704	Soybean	nucleus	25.33	20.99
KRH16191	Soybean	nucleus	16.67	20.27
AT1G24160.1	Thale cress	nucleus	24.0	20.0
CDY38789	Canola	nucleus	13.11	19.8
Zm00001d005523_P001	Maize	cytosol, extracellular, plastid	7.11	15.46
GSMUA_Achr6P03270_001	Banana	nucleus	13.33	14.46
OQU79091	Sorghum	nucleus	13.11	14.29
PGSC0003DMT400058225	Potato	nucleus	18.44	13.93
HORVU2Hr1G014490.1	Barley	plastid	5.56	13.66
PGSC0003DMT400032926	Potato	nucleus	14.22	12.52
PGSC0003DMT400017939	Potato	nucleus	13.78	12.5
TraesCS6A01G159300.1	Wheat	nucleus	15.33	12.48
TraesCS6D01G153200.1	Wheat	nucleus	15.33	12.48
EES06976	Sorghum	nucleus	14.44	12.33
TraesCS6B01G192000.1	Wheat	nucleus	15.11	12.3
TraesCS3D01G400000.1	Wheat	nucleus	15.56	12.26
PGSC0003DMT400031254	Potato	nucleus	17.56	12.25
Zm00001d016849_P002	Maize	nucleus	14.89	12.03
TraesCS3B01G438400.1	Wheat	nucleus	15.11	11.91
Os01t0885300-01	Rice	nucleus	14.89	11.69
EES03998	Sorghum	nucleus	14.67	11.64
TraesCS2D01G087000.1	Wheat	nucleus	12.44	11.59
TraesCS3A01G404700.2	Wheat	nucleus	14.44	11.34
HORVU6Hr1G033310.33	Barley	cytosol	14.89	11.19
GSMUA_Achr7P23570_001	Banana	nucleus	12.89	10.86
TraesCS2B01G104800.2	Wheat	nucleus	11.56	10.77
Os02t0558600-01	Rice	nucleus	14.0	10.62
GSMUA_Achr6P24150_001	Banana	nucleus	10.67	10.6
Zm00001d023630_P005	Maize	nucleus	10.22	9.87
Zm00001d042598_P003	Maize	mitochondrion	14.0	9.8
GSMUA_Achr6P18450_001	Banana	nucleus	11.33	9.68
Os12t0273700-01	Rice	nucleus	8.22	9.23
PGSC0003DMT400078339	Potato	nucleus	13.33	8.8
TraesCS1A01G263200.1	Wheat	nucleus	13.56	8.36
EES18249	Sorghum	nucleus	14.22	8.34
Zm00001d038217_P002	Maize	nucleus	13.78	8.22
TraesCS1D01G263300.1	Wheat	nucleus	13.33	8.21
TraesCS2A01G089100.1	Wheat	nucleus	6.0	8.18
HORVU1Hr1G063930.1	Barley	nucleus	13.11	8.08
TraesCS1B01G273800.1	Wheat	nucleus	12.89	7.93
Os05t0420500-01	Rice	nucleus	12.44	7.88
HORVU2Hr1G014550.1	Barley	cytosol	6.0	4.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400004849	EnsemblPlantsGene:PGSC0003DMG401001926	EntrezGene:102593323	PANTHER:PTHR31358	PANTHER:PTHR31358:SF17	PGSC:PGSC0003DMG401001926
RefSeq:XP_006363538.2	SEG:seg	UniParc:UPI0002948A2F	UniProt:M0ZP28	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401001926]

Coordinates

chr00:-:12380818..12385201

Molecular Weight (calculated)

49642.6 Da

IEP (calculated)

10.302

GRAVY (calculated)

-0.907

Length

450 amino acids

Sequence
(BLAST)

001: MDELGPTLEV SVSFGKYEND ALSWEKWSSF SPNKYLEEAD KCKTSGSVAQ KKAYFEAHYK KIATQKMELE KMEQVESLDE PHIQDRSEST HVFDTDRCAT
101: QGEEEMTRAD MNNSDSVDME VNSLLVLKDK EGEILDHGEV PNVEQHKSCE IGSQDNLKEI SQVDNEAKSS SAKKSKTPKS NLKNTARKVH PTTEDRISAG
201: TKKKLASPVT KSSRISTPTS KPPPASKVIS SSQTSVKKVN GVSYQRSSNA PVAQGNKLLS RSLISPSQSS IKKLNGSTLQ RSKNSSTLEN KRIAPTSLHM
301: SLSLGPPNST ASTNTMRKSL IMERMGDKDI VKRAFKAFQS SFNQGKPEVD TRYSGSKKVL PKGSEQKISA SPTPKKEVER LRKTSDTVMT QKCQSGTRSN
401: SLSSRAPKDA VIERKKVNSV RPAGMSIDRS IDKLKEDIIK GKIHRAGSNR

Best Arabidopsis Sequence Match ( AT1G70100.4 )
(BLAST)

001: MVDMEVGIAS GEDKITTAAS SNQELQVSVS FGKFENDSLS WEKFSSFSPN KYLEEVEKCA TAGSVAQKKA YFESHYKKIA ERRADIIMEQ EKLLERNASF
101: RPNIQNRERT DDSDNDESMM IEFSTGYGSN GESTSEEDKL VTVIVTEVNE TCNHKPLEET MDFKECRSSV DTGDDLSTLK LEEKLEEIVQ VEDKEKVEEV
201: ICMKEEVKED VPSKDTGEMS ETLMKETKKE KDHNPIKKTD KNVRTNHMRA SPKSNQVTKK PVTSKVVSGR KTQPSKEKSM TKATNKAASP VLKPPGFSTP
301: RVSKSASTIS SMSTSRSSVK KESVSTLLRK KQTAPKSLPI SLNVDQSVSD PTAVPTTRKS LIMERMGDKD IVRRAFKSFQ KSFDQMKSTD DGQDTAPKQV
401: LAKATAVQRL GTTGQKNVRL AKSDGTERKG PNSHRSSSVV SKSNGTAEKQ KDPSRLGTRA VERIHLQAKP KKQAMSKLGG KV

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits to 2309 proteins in 344 species: Archae - 6; Bacteria - 672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses - 37; Other Eukaryot /.../83 (source: NCBI BLink). [Source:TAIR;Acc:AT1G70100]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.