Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46410 | Canola | cytosol | 11.7 | 36.81 |
| KRG99221 | Soybean | nucleus | 31.19 | 33.54 |
| KRH69438 | Soybean | nucleus | 31.58 | 32.27 |
| CDY11620 | Canola | nucleus | 27.88 | 29.18 |
| KRH45764 | Soybean | nucleus | 27.29 | 29.05 |
| CDY16238 | Canola | nucleus | 28.27 | 28.66 |
| Bra016318.1-P | Field mustard | nucleus | 27.1 | 28.48 |
| PGSC0003DMT400004849 | Potato | nucleus | 24.95 | 28.44 |
| AT1G24160.1 | Thale cress | nucleus | 29.82 | 28.33 |
| Bra024641.1-P | Field mustard | nucleus | 27.88 | 28.32 |
| CDY14672 | Canola | nucleus | 27.29 | 28.23 |
| KRH74704 | Soybean | nucleus | 29.43 | 27.81 |
| Bra016236.1-P | Field mustard | nucleus | 25.93 | 27.59 |
| AT1G70100.3 | Thale cress | nucleus | 26.51 | 26.98 |
| KRH33693 | Soybean | nucleus | 11.11 | 26.76 |
| CDY38789 | Canola | nucleus | 14.62 | 25.17 |
| KRG99370 | Soybean | nucleus | 11.7 | 24.79 |
| VIT_14s0219g00090.t01 | Wine grape | nucleus | 23.98 | 21.69 |
| Solyc04g005060.2.1 | Tomato | nucleus | 15.4 | 21.12 |
| KRH16191 | Soybean | nucleus | 14.62 | 20.27 |
| VIT_01s0010g02240.t01 | Wine grape | nucleus | 14.23 | 19.78 |
| VIT_01s0011g04850.t01 | Wine grape | nucleus | 22.42 | 19.39 |
| PGSC0003DMT400058225 | Potato | nucleus | 19.49 | 16.78 |
| Solyc05g006490.2.1 | Tomato | nucleus | 19.3 | 16.45 |
| VIT_07s0005g05560.t01 | Wine grape | mitochondrion, plastid | 2.34 | 14.12 |
| VIT_18s0001g05830.t01 | Wine grape | nucleus | 12.87 | 12.64 |
Protein Annotations
| ArrayExpress:VIT_01s0026g00960 | EMBL:FN596002 | EnsemblPlants:VIT_01s0026g00960.t01 | EnsemblPlantsGene:VIT_01s0026g00960 | EntrezGene:100258808 | EntrezGene:LOC100258808 |
| InterPro:TPX2_C | ncoils:Coil | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF17 | PFAM:PF06886 | ProteinID:CBI32074 |
| ProteinID:CBI32074.3 | RefSeq:XP_002267713 | RefSeq:XP_002267713.2 | SEG:seg | TIGR:TC53659 | UniParc:UPI0001BE3CC3 |
| UniProt:D7TNK1 | wikigene:100258808 | wikigene:LOC100258808 | MapMan:20.1.5.2 | : | : |
Description
No Description!
Coordinates
chr1:-:9882716..9887808
Molecular Weight (calculated)
56249.0 Da
IEP (calculated)
10.059
GRAVY (calculated)
-0.987
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESIVGALK DENKMGESAA SDDVLEASVS FGRFENDSSL SWEKWSSFSP NKYLEEVEKC STPGSVAQKK AYFEAHYKKI AARKAELLDL EKQMGTDPLG
101: SDDPNCGDQI RNTDGNNTEF DVSNGQSSAE GVDQDTNLIS VVTTTHVDEP SESNEGAPIT IECQSSSVEE AEEELDSKQG TPKLKDGEET VSIKEEASPM
201: GSQNVMELPP SLDNGTGNTP RIKKERPKLD PPKETKKITL ANKERKTASV MKKAVSPIAK SPQISKPRDS KPTPTSKMIS SSQPSIKKAN GSSLPKNKNP
301: SAGEIKKPSP RSKIPSAGEW KKVAPTSLHK SLSLGPPHSD SASLTTTRKS LIMEKMGDKD IVRRAFKTFQ NSFNQLKPSS EVRSSVPKQV SAKSTEPRVS
401: TSITTQRDKE RPLKAGVVDQ KNTKTAPTFG LRSNERAEKR KEFFKKLEEK SNAKQTEKTR LQSKSKEQKE VEIKKLRQSL NFKATPMPGF YQGQRTSKSN
501: LNKEVAKHGS SLA
101: SDDPNCGDQI RNTDGNNTEF DVSNGQSSAE GVDQDTNLIS VVTTTHVDEP SESNEGAPIT IECQSSSVEE AEEELDSKQG TPKLKDGEET VSIKEEASPM
201: GSQNVMELPP SLDNGTGNTP RIKKERPKLD PPKETKKITL ANKERKTASV MKKAVSPIAK SPQISKPRDS KPTPTSKMIS SSQPSIKKAN GSSLPKNKNP
301: SAGEIKKPSP RSKIPSAGEW KKVAPTSLHK SLSLGPPHSD SASLTTTRKS LIMEKMGDKD IVRRAFKTFQ NSFNQLKPSS EVRSSVPKQV SAKSTEPRVS
401: TSITTQRDKE RPLKAGVVDQ KNTKTAPTFG LRSNERAEKR KEFFKKLEEK SNAKQTEKTR LQSKSKEQKE VEIKKLRQSL NFKATPMPGF YQGQRTSKSN
501: LNKEVAKHGS SLA
001: MGDMQVGVAT IDDKGFYGLM EDTQVKAVAS SNPSLQVSVS FGRFENDSLS WEKFSAFSPN KYLEEVGKCA TPGSVAQKKA YFEAHYKKIA ERKAEIIDQE
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
Arabidopsis Description
F3I6.9 protein [Source:UniProtKB/TrEMBL;Acc:O48683]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.