Factsheet for AT1G70100.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016236.1-P	Field mustard	nucleus	47.22	49.38
CDY11620	Canola	nucleus	45.83	47.14
CDY38789	Canola	nucleus	24.6	41.61
AT1G24160.1	Thale cress	nucleus	40.67	37.96
KRH69438	Soybean	nucleus	27.58	27.69
KRH45764	Soybean	nucleus	25.6	26.76
VIT_01s0026g00960.t01	Wine grape	nucleus	26.98	26.51
KRH74704	Soybean	nucleus	27.38	25.41
KRG99370	Soybean	nucleus	12.1	25.21
PGSC0003DMT400004849	Potato	nucleus	22.02	24.67
KRG99221	Soybean	nucleus	23.21	24.53
KRH33693	Soybean	nucleus	9.72	23.0
KRH16191	Soybean	nucleus	15.87	21.62
AT5G40700.2	Thale cress	nucleus, plastid	12.5	20.79
AT3G27350.2	Thale cress	cytosol, nucleus, plastid	11.71	18.5
AT1G70950.1	Thale cress	nucleus	16.67	17.57
AT1G23060.1	Thale cress	nucleus	12.5	17.17
Solyc04g005060.2.1	Tomato	nucleus	12.5	16.84
AT3G01710.3	Thale cress	nucleus	13.29	16.34
Solyc05g006490.2.1	Tomato	nucleus	19.05	15.95
PGSC0003DMT400058225	Potato	nucleus	17.86	15.1
AT3G26050.1	Thale cress	nucleus	12.5	11.82

Protein Annotations

MapMan:35.2	EntrezGene:843346	ProteinID:AEE35019.1	ProteinID:ANM59240.1	ArrayExpress:AT1G70100	EnsemblPlantsGene:AT1G70100
RefSeq:AT1G70100	TAIR:AT1G70100	RefSeq:AT1G70100-TAIR-G	EnsemblPlants:AT1G70100.3	TAIR:AT1G70100.3	Unigene:At.10306
UniProt:F4I3X3	GO:GO:0008150	RefSeq:NP_001321614.1	RefSeq:NP_974118.1	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR31358	PANTHER:PTHR31358:SF17
UniParc:UPI000034F51D	SEG:seg	:	:	:	:

Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits to 2309 proteins in 344 species: Archae - 6; Bacteria - 672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses - 37; Other Eukaryot /.../83 (source: NCBI BLink). [Source:TAIR;Acc:AT1G70100]

Coordinates

chr1:+:26402978..26406190

Molecular Weight (calculated)

55973.0 Da

IEP (calculated)

9.793

GRAVY (calculated)

-0.922

Length

504 amino acids

Sequence
(BLAST)

001: MVDMEVGIAS GEDKITTAAS SNQELQVSVS FGKFENDSLS WEKFSSFSPN KYLEEVEKCA TAGSVAQKKA YFESHYKKIA ERRADIIMEQ EKLLERNASF
101: RPNIQNRERT DDSDNDESMM IEFSTGYGSN GESTSEEDKL VTVIVTEVNE TCNHKPLEET MDFKECRSSV DTGDDLSTLK LEEKLEEIVQ VEDKEKVEEV
201: ICMKEEVKED VPSKDTGEMS ETLMKETKKE KDHNPIKKTD KNVRTNHMRA SPKSNQVTKK PVTSKVVSGR KTQPSKEKSM TKATNKAASP VLKPPGFSTP
301: RVSKSASTIS SMSTSRSSVK KESVSTLLRK KQTAPKSLPI SLNVDQSVSD PTAVPTTRKS LIMERMGDKD IVRRAFKSFQ KSFDQMKSTD DGQDTAPKQV
401: LAKATAVQRL GTTGQKNVRL AKSDGTERKG PNSHRSSSVV SKSNGTAEKQ KDPSRLGTRA VERIHLQAKP KAEASNVKTR RQSLNPKENP IQGPLPKGYS
501: DKVL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.