Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13707 | Canola | nucleus | 43.26 | 54.33 |
| CDY48358 | Canola | nucleus | 44.2 | 50.54 |
| CDX83685 | Canola | nucleus | 39.19 | 50.2 |
| Bra033005.1-P | Field mustard | nucleus | 43.89 | 50.18 |
| CDY34153 | Canola | nucleus | 43.89 | 50.18 |
| Bra025270.1-P | Field mustard | nucleus | 38.87 | 49.01 |
| AT5G40700.2 | Thale cress | nucleus, plastid | 29.47 | 31.02 |
| AT3G01710.3 | Thale cress | nucleus | 21.63 | 16.83 |
| AT1G23060.1 | Thale cress | nucleus | 17.87 | 15.53 |
| AT1G70100.3 | Thale cress | nucleus | 18.5 | 11.71 |
| AT1G70950.1 | Thale cress | nucleus | 16.93 | 11.3 |
| Solyc05g014270.2.1 | Tomato | nucleus | 19.75 | 9.46 |
| AT1G24160.1 | Thale cress | nucleus | 15.99 | 9.44 |
| AT3G26050.1 | Thale cress | nucleus | 15.36 | 9.19 |
| PGSC0003DMT400031254 | Potato | nucleus | 18.18 | 8.99 |
Protein Annotations
| MapMan:35.2 | EntrezGene:822356 | ProteinID:AEE77307.1 | ArrayExpress:AT3G27350 | EnsemblPlantsGene:AT3G27350 | RefSeq:AT3G27350 |
| TAIR:AT3G27350 | RefSeq:AT3G27350-TAIR-G | EnsemblPlants:AT3G27350.2 | TAIR:AT3G27350.2 | Unigene:At.37077 | UniProt:F4IWH1 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | RefSeq:NP_001189988.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF12 |
| UniParc:UPI0001E92EC5 | SEG:seg | : | : | : | : |
Description
Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
Coordinates
chr3:+:10125659..10127992
Molecular Weight (calculated)
36707.6 Da
IEP (calculated)
7.607
GRAVY (calculated)
-0.742
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIREWHRLCS IHTSLEKSPS AIGISFFCLV
301: LFESLLSVLL CNERTTPVS
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIREWHRLCS IHTSLEKSPS AIGISFFCLV
301: LFESLLSVLL CNERTTPVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.