Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16238 | Canola | nucleus | 50.19 | 53.56 |
| Bra024641.1-P | Field mustard | nucleus | 48.89 | 52.28 |
| Bra016318.1-P | Field mustard | nucleus | 42.22 | 46.72 |
| CDY14672 | Canola | nucleus | 41.11 | 44.76 |
| AT1G70100.3 | Thale cress | nucleus | 37.96 | 40.67 |
| CDY46410 | Canola | cytosol | 11.67 | 38.65 |
| KRH45764 | Soybean | nucleus | 27.41 | 30.71 |
| VIT_01s0026g00960.t01 | Wine grape | nucleus | 28.33 | 29.82 |
| KRG99221 | Soybean | nucleus | 25.56 | 28.93 |
| KRH74704 | Soybean | nucleus | 29.07 | 28.91 |
| KRH69438 | Soybean | nucleus | 26.48 | 28.49 |
| KRH33693 | Soybean | nucleus | 10.93 | 27.7 |
| PGSC0003DMT400004849 | Potato | nucleus | 20.0 | 24.0 |
| KRG99370 | Soybean | nucleus | 10.37 | 23.14 |
| KRH16191 | Soybean | nucleus | 15.0 | 21.89 |
| AT5G40700.2 | Thale cress | nucleus, plastid | 11.67 | 20.79 |
| AT3G01710.3 | Thale cress | nucleus | 13.52 | 17.8 |
| Solyc04g005060.2.1 | Tomato | nucleus | 12.04 | 17.38 |
| Solyc05g006490.2.1 | Tomato | nucleus | 19.26 | 17.28 |
| AT1G23060.1 | Thale cress | nucleus | 11.48 | 16.89 |
| AT1G70950.1 | Thale cress | nucleus | 14.81 | 16.74 |
| AT3G27350.2 | Thale cress | cytosol, nucleus, plastid | 9.44 | 15.99 |
| PGSC0003DMT400058225 | Potato | nucleus | 17.04 | 15.44 |
| AT3G26050.1 | Thale cress | nucleus | 12.41 | 12.57 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839029 | ProteinID:AAC00576.1 | ProteinID:AEE30489.1 | ProteinID:AEE30490.1 | ArrayExpress:AT1G24160 |
| EnsemblPlantsGene:AT1G24160 | RefSeq:AT1G24160 | TAIR:AT1G24160 | RefSeq:AT1G24160-TAIR-G | EnsemblPlants:AT1G24160.1 | TAIR:AT1G24160.1 |
| Unigene:At.41472 | ncoils:Coil | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009506 | RefSeq:NP_001185079.1 |
| RefSeq:NP_173826.1 | UniProt:O48683 | PO:PO:0000293 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF17 | UniParc:UPI000009F235 |
| SEG:seg | : | : | : | : | : |
Description
F3I6.9 protein [Source:UniProtKB/TrEMBL;Acc:O48683]
Coordinates
chr1:-:8553313..8556750
Molecular Weight (calculated)
59550.4 Da
IEP (calculated)
9.293
GRAVY (calculated)
-0.837
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDMQVGVAT IDDKGFYGLM EDTQVKAVAS SNPSLQVSVS FGRFENDSLS WEKFSAFSPN KYLEEVGKCA TPGSVAQKKA YFEAHYKKIA ERKAEIIDQE
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.