Factsheet for AT3G26050.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99732	Canola	nucleus	29.08	29.03
CDY40987	Canola	nucleus	29.08	26.96
Bra036350.1-P	Field mustard	nucleus	27.95	26.75
HORVU2Hr1G014490.1	Barley	plastid	7.32	21.31
AT3G01710.3	Thale cress	nucleus	14.45	18.78
AT5G40700.2	Thale cress	nucleus, plastid	9.76	17.16
VIT_01s0010g02240.t01	Wine grape	nucleus	11.63	16.8
AT1G23060.1	Thale cress	nucleus	11.26	16.35
AT1G70950.1	Thale cress	nucleus	13.88	15.48
AT3G27350.2	Thale cress	cytosol, nucleus, plastid	9.19	15.36
TraesCS2B01G104800.2	Wheat	nucleus	13.7	15.11
TraesCS2D01G087000.1	Wheat	nucleus	13.13	14.49
OQU79091	Sorghum	nucleus	10.88	14.04
AT1G70100.3	Thale cress	nucleus	11.82	12.5
Zm00001d023630_P005	Maize	nucleus	10.88	12.45
AT1G24160.1	Thale cress	nucleus	12.57	12.41
Os12t0273700-01	Rice	nucleus	9.19	12.22
TraesCS2A01G089100.1	Wheat	nucleus	6.19	10.0
HORVU2Hr1G014550.1	Barley	cytosol	6.38	6.19

Protein Annotations

MapMan:35.2	EntrezGene:822202	ProteinID:AEE77108.1	ArrayExpress:AT3G26050	EnsemblPlantsGene:AT3G26050	RefSeq:AT3G26050
TAIR:AT3G26050	RefSeq:AT3G26050-TAIR-G	EnsemblPlants:AT3G26050.1	TAIR:AT3G26050.1	Unigene:At.37284	EMBL:BT004043
EMBL:BT004944	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	RefSeq:NP_189234.1	PFAM:PF06886	PO:PO:0000037
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007611	PO:PO:0007616
PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009052	PO:PO:0020100	PO:PO:0025022	PANTHER:PTHR31358	PANTHER:PTHR31358:SF17
UniProt:Q84JG6	InterPro:TPX2_C	UniParc:UPI000000C24D	SEG:seg	:	:

Description

TPX2 (Targeting protein for Xklp2) protein family [Source:UniProtKB/TrEMBL;Acc:Q84JG6]

Coordinates

chr3:+:9521737..9524583

Molecular Weight (calculated)

58915.6 Da

IEP (calculated)

10.751

GRAVY (calculated)

-0.825

Length

533 amino acids

Sequence
(BLAST)

001: MGESICLVRS FSQPSEFSSR EINEVVPNRV LTESVSFGRY ANETLAWARW SAFTQNRYLE EVERFTKPGS VAEKKAFFEA HFKNRASGKA ATQTKKIEQV
101: KVKDSVEIVC DIPKDILVDS EVPLAVNREV SSNEVDSVVP SISVIDETGK VENLKSVVVP DEGNSTSLSK ERPPSSSGSK VSSSKLESSV VIELDHSLKN
201: TKKESSSSST RSLSASKNRS RSPPEPIHMS ISCVSSSNTE KTIVGRPQNG SRSAVKADKK KRSGPSSVHM SLNFASSTLR TTKEAPKTLA RNSTTQGTTS
301: TNARNKLFPK INEPTGALKS CKRPLSQTSK DGSTNASAVT LPRLPLLSNL LSENKRKNIS VRSSVSCRIS NNEQRKPSVG CENLSTHSRT KAKSLTVSSP
401: FVFRSDERAE KRKEFFKKVE EKNKKEKEDK FSCGFKANQN TNLASEEHKN PQVGGFQVTP MTLTSPRFRR NQTPGKENIK KPHQTPHKAS SMKIINTKKV
501: VMEKHKSSKI HPSSKQQTTK RTQENMSPNI LQN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.