Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25766 | Canola | nucleus | 41.14 | 40.7 |
| CDY12493 | Canola | nucleus | 22.07 | 25.88 |
| Bra012357.1-P | Field mustard | nucleus | 17.17 | 19.27 |
| AT3G27350.2 | Thale cress | cytosol, nucleus, plastid | 15.53 | 17.87 |
| AT5G40700.2 | Thale cress | nucleus, plastid | 14.71 | 17.82 |
| AT1G70950.1 | Thale cress | nucleus | 20.16 | 15.48 |
| AT3G01710.3 | Thale cress | nucleus | 15.26 | 13.66 |
| GSMUA_Achr6P03270_001 | Banana | nucleus | 14.71 | 13.01 |
| AT1G70100.3 | Thale cress | nucleus | 17.17 | 12.5 |
| AT1G24160.1 | Thale cress | nucleus | 16.89 | 11.48 |
| AT3G26050.1 | Thale cress | nucleus | 16.35 | 11.26 |
Protein Annotations
| MapMan:35.1 | EntrezGene:838914 | UniProt:A0A178W2Z1 | ProteinID:AEE30329.1 | ProteinID:ANM57925.1 | ArrayExpress:AT1G23060 |
| EnsemblPlantsGene:AT1G23060 | RefSeq:AT1G23060 | TAIR:AT1G23060 | RefSeq:AT1G23060-TAIR-G | EnsemblPlants:AT1G23060.1 | TAIR:AT1G23060.1 |
| EMBL:AY057558 | EMBL:AY090317 | Unigene:At.26313 | GO:GO:0008150 | RefSeq:NP_001320400.1 | RefSeq:NP_564188.1 |
| ProteinID:OAP12071.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0001054 |
| PO:PO:0001185 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF28 | UniProt:Q93ZG1 |
| UniParc:UPI00000A06EB | SEG:seg | : | : | : | : |
Description
MDP40 [Source:UniProtKB/TrEMBL;Acc:A0A178W2Z1]
Coordinates
chr1:-:8170693..8173085
Molecular Weight (calculated)
41007.2 Da
IEP (calculated)
10.614
GRAVY (calculated)
-0.887
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEVQDPFN LSLLENSIHS GSVSFGRFEK ESLSWERRSS FSRNIYLEEA ERFSKPGSVT QMRAHFEAHF KKKGIRFPSS VESQTWGEVV HHQTCTEKDE
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.