CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G23060.1	Thale cress	nucleus	40.7	41.14
CDY12493	Canola	nucleus	31.0	36.74
CDY46410	Canola	cytosol	11.32	25.77
CDX99631	Canola	cytosol	9.7	24.83
CDY13707	Canola	nucleus	13.75	20.08
CDY48358	Canola	nucleus	14.56	19.35
CDY32377	Canola	nucleus	15.36	19.32
CDX91933	Canola	nucleus	16.44	18.83
CDX72762	Canola	nucleus	22.91	18.72
CDX83685	Canola	nucleus	12.13	18.07
CDY34153	Canola	nucleus	13.48	17.92
CDX96289	Canola	nucleus	22.91	17.53
CDX67471	Canola	nucleus	13.75	16.72
CDY11706	Canola	nucleus	13.75	16.72
CDY38789	Canola	nucleus	12.67	15.77
CDY42558	Canola	nucleus	12.13	15.36
CDX74313	Canola	nucleus	16.44	15.25
CDY33408	Canola	nucleus	15.09	15.05
CDY11620	Canola	nucleus	18.33	13.88
GSMUA_Achr6P03270_001	Banana	nucleus	15.36	13.73
CDY36374	Canola	nucleus	12.4	13.69
CDY16238	Canola	nucleus	18.6	13.64
CDY14672	Canola	nucleus	18.06	13.51
CDY15926	Canola	plastid	7.55	11.29
CDY38790	Canola	nucleus	4.04	10.79
CDY46409	Canola	nucleus	7.55	10.65
CDY40987	Canola	nucleus	15.36	9.91
CDX99732	Canola	nucleus	13.75	9.55

Protein Annotations

EnsemblPlants:CDY25766	EnsemblPlantsGene:GSBRNA2T00033158001	PANTHER:PTHR31358	PANTHER:PTHR31358:SF28	ProteinID:CDY25766	ProteinID:CDY25766.1
SEG:seg	UniParc:UPI0004EED51B	UniProt:A0A078GK52	MapMan:35.1	:	:

Description

BnaA07g10160DBnaA07g10160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK52]

Coordinates

chrLK032180:-:180184..182000

Molecular Weight (calculated)

40882.9 Da

IEP (calculated)

10.579

GRAVY (calculated)

-0.851

Length

371 amino acids

Sequence
(BLAST)

001: MAGEIQEPLN LSLLENSIHS GSVSFGRFEK ESLSWEKRSS FSHNRYLEEA ERFSKPGSVT QMRAHFEAHF KKKGIKLPSS VEAQTWGEVA QHHQQTASEK
101: EENLWEKKSS FGDSCLSYES YDDHSSLSVA SEKIGIGCSE RSVEDKAEMS FPSATALKSL KNDRKATPSY AKTTKTTTKK DVVIAKGSSS CNTKTSFDTK
201: RGKEMKPALI VKSNASQAPV TKKTESLTPL AANKFRSKNT FGSAMKERTA TNGFSSRSSE RVEKRKEENV EAIVQKSLNF KARPVLLARP QDTSIGQEKV
301: RKDAQAHSSK ASSNRSLANG AAKSKLNINK QKVDTQRSLT GIRPNSRDQT AKNNANGRSL AVRRAAVEVA L

Best Arabidopsis Sequence Match ( AT1G23060.4 )
(BLAST)

001: MAGEVQDPFN LSLLENSIHS GSVSFGRFEK ESLSWERRSS FSRNIYLEEA ERFSKPGSVT QMRAHFEAHF KKKGIRFPSS VESQTWGEVV HHQTCTEKDE
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL

Arabidopsis Description

MDP40 [Source:UniProtKB/TrEMBL;Acc:A0A178W2Z1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.