CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016172.1-P	Field mustard	nucleus	94.43	95.22
CDX72762	Canola	nucleus	79.38	84.8
AT1G70950.1	Thale cress	nucleus	37.94	38.49
CDY46410	Canola	cytosol	9.28	27.61
CDX99631	Canola	cytosol	8.04	26.9
VIT_01s0011g04850.t01	Wine grape	nucleus	29.48	24.11
CDY25766	Canola	nucleus	17.53	22.91
CDX83685	Canola	nucleus	11.55	22.49
KRH50366	Soybean	nucleus	28.04	22.22
CDY13707	Canola	nucleus	11.34	21.65
CDY38789	Canola	nucleus	13.2	21.48
KRG89293	Soybean	nucleus	25.77	19.59
CDY32377	Canola	nucleus	11.75	19.32
CDY33408	Canola	nucleus	14.64	19.09
CDX91933	Canola	nucleus	12.58	18.83
CDY11706	Canola	nucleus	11.75	18.69
CDX67471	Canola	nucleus	11.34	18.03
CDY48358	Canola	nucleus	10.31	17.92
CDY34153	Canola	nucleus	10.1	17.56
CDY36374	Canola	nucleus	12.16	17.56
PGSC0003DMT400078339	Potato	nucleus	24.54	17.45
CDY11620	Canola	nucleus	17.32	17.14
CDY42558	Canola	nucleus	10.31	17.06
Solyc05g008090.2.1	Tomato	nucleus	23.09	16.35
CDX74313	Canola	nucleus	13.2	16.0
CDY14672	Canola	nucleus	14.85	14.52
CDY16238	Canola	nucleus	15.05	14.43
CDX99732	Canola	nucleus	15.26	13.86
CDY40987	Canola	nucleus	15.46	13.04
CDY15926	Canola	plastid	5.15	10.08
CDY12493	Canola	nucleus	5.98	9.27
CDY46409	Canola	nucleus	4.95	9.13
CDY38790	Canola	nucleus	2.27	7.91

Protein Annotations

EnsemblPlants:CDX96289	EnsemblPlantsGene:GSBRNA2T00102429001	InterPro:TPX2_C	ncoils:Coil	PANTHER:PTHR31358	PANTHER:PTHR31358:SF28
PFAM:PF06886	ProteinID:CDX96289	ProteinID:CDX96289.1	SEG:seg	UniParc:UPI0004EEE555	MapMan:20.1.5.2

Description

BnaA07g29000D

Coordinates

chrLK031894:+:132962..135484

Molecular Weight (calculated)

54189.1 Da

IEP (calculated)

7.474

GRAVY (calculated)

-0.948

Length

485 amino acids

Sequence
(BLAST)

001: MRDTMAGSEI QEPFSLSFQE SSIHSGSISF GRFEEEGLSW EKRSSFSHNR YLEEVDKCSK PGSVTEMKAH FEAHFKKRGM RLPSSIESQT WGVRQTDDDA
101: TESFEDYRSD GSFSDNTSRS QSPCNYILDQ GKSQCEYVEE SDHCVSYDEI VVNSDDVIEL DEEGGVTLDV SLDNDEVVPV ECISIKEVRS EVLGPQEMPL
201: EIEVRDDDED KKHCAEVQET ESRLVEHVPE KASDVTERPS SACEPKSLPN AKPIIPKAVD VTPKAVSGRT KGSYLSANSK TKVDDAKSQK ELRPKKTVES
301: RTSTSKKIET RTPLATNRPK TGSYSAKLEM CTGATSFRFK CSERAEKRKE FYMKLEEKIH AKKTETNQVQ AKTQQKAEAE IKQFRKSLNF KATPMPSFYN
401: TATRPVSRYK TEPSKVAPSR PRSTTSASST NRRVSRVGDK HGTEEGKMVK ATVGNRKPSA AKDSGLQKGN FMAVETKQKV GKSGN

Best Arabidopsis Sequence Match ( AT1G70950.1 )
(BLAST)

001: MAGEIQDPFS LSFQGNSIHS GSISFGRFEK EGLSWEKRSS FSHNRYLEEV DKCSKPGSVT EMKAHFEAHF KKKGIRFPAS LESQTWGVHQ TSNEPDDEAV
101: HATESFEDYR SDGSFSEDTS QSNSVCNYSH EQEKCGQGKS QCEFDEESDH CVSYDEILVN SDEVIELDEE EGGGDHGRVA DLVECENLGP PEMPQEIVIQ
201: DSALVEEAGS KLDEHASKKP SNSMETPSSS VNVKPIIPND VRVTKASTKG HDVTPKAASR RTKGSSLSSN SKTNVDAKSQ KELRPKKTIE SQPKSSNKTE
301: TRPPIATNRC KTSTTSSKLE MSTGSTSFRF KCSERAEKRK EFYMKLEEKI HAKKTETNQV QAKTQQKAEA EIKQFRKSLN FKATPMPSFY NIGTRPVSHN
401: KTEPSKVAQS RSRPATSASI TNRAVTRVSY KHGFEEAEMV KVMVSNRKQS AAKDSDLQKG NLMAVEMKQQ IGARRSRN

Arabidopsis Description

WDL7Protein WVD2-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q67Y69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.