Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36374 | Canola | nucleus | 74.74 | 65.18 |
| CDX99631 | Canola | cytosol | 30.03 | 60.69 |
| CDX67471 | Canola | nucleus | 50.17 | 48.2 |
| CDY11706 | Canola | nucleus | 49.83 | 47.87 |
| CDX83685 | Canola | nucleus | 31.74 | 37.35 |
| CDY13707 | Canola | nucleus | 29.35 | 33.86 |
| AT5G40700.2 | Thale cress | nucleus, plastid | 34.81 | 33.66 |
| CDY34153 | Canola | nucleus | 29.01 | 30.47 |
| CDY48358 | Canola | nucleus | 28.67 | 30.11 |
| CDY46410 | Canola | cytosol | 15.02 | 26.99 |
| CDY15926 | Canola | plastid | 22.53 | 26.61 |
| CDY32377 | Canola | nucleus | 23.89 | 23.73 |
| CDX91933 | Canola | nucleus | 24.23 | 21.91 |
| CDY33408 | Canola | nucleus | 23.89 | 18.82 |
| CDX74313 | Canola | nucleus | 24.57 | 18.0 |
| CDY38789 | Canola | nucleus | 18.09 | 17.79 |
| CDY38790 | Canola | nucleus | 5.8 | 12.23 |
| CDY25766 | Canola | nucleus | 15.36 | 12.13 |
| CDY14672 | Canola | nucleus | 19.45 | 11.49 |
| CDX72762 | Canola | nucleus | 17.75 | 11.45 |
| CDY11620 | Canola | nucleus | 19.11 | 11.43 |
| CDY16238 | Canola | nucleus | 19.45 | 11.26 |
| CDX96289 | Canola | nucleus | 17.06 | 10.31 |
| PGSC0003DMT400031254 | Potato | nucleus | 22.18 | 10.08 |
| Solyc05g014270.2.1 | Tomato | nucleus | 20.82 | 9.16 |
| CDX99732 | Canola | nucleus | 16.04 | 8.8 |
| CDY46409 | Canola | nucleus | 7.51 | 8.37 |
| CDY40987 | Canola | nucleus | 16.38 | 8.35 |
| CDY12493 | Canola | nucleus | 8.19 | 7.67 |
Protein Annotations
| EnsemblPlants:CDY42558 | EnsemblPlantsGene:GSBRNA2T00075045001 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF12 | ProteinID:CDY42558 | ProteinID:CDY42558.1 |
| SEG:seg | UniParc:UPI0004EF37A2 | UniProt:A0A078I0I3 | MapMan:35.2 | : | : |
Description
BnaA04g10550DBnaA04g10550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0I3]
Coordinates
chrLK032529:+:49336..50802
Molecular Weight (calculated)
33309.0 Da
IEP (calculated)
5.253
GRAVY (calculated)
-0.873
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESAVLFHS YSFGAPPLSR NETHQDNTKH ALSQSVSFGR FTTENLEWGK WSSFSHKKYV DEAEKYSQPG SVAQKKAFFD AHYKKMAESK KAKTALDESK
101: QEQPESVVVL LNTLETLTKD EVKEQESGET ELVKEEPERK YVVVILEQED VVVGSSLAEP VTEDDLQAVV EVLDEREEDE ELLKKSSSVE EKEEERKFVT
201: NKSSVFPSET PDKAMELVVT QKLSEDSIKK NEKSVRPRFS FLKLLMGSST KAQRQNSKKK TDKKPNKPFL CLCFNPEMVG ETEGPTKTQR RNL
101: QEQPESVVVL LNTLETLTKD EVKEQESGET ELVKEEPERK YVVVILEQED VVVGSSLAEP VTEDDLQAVV EVLDEREEDE ELLKKSSSVE EKEEERKFVT
201: NKSSVFPSET PDKAMELVVT QKLSEDSIKK NEKSVRPRFS FLKLLMGSST KAQRQNSKKK TDKKPNKPFL CLCFNPEMVG ETEGPTKTQR RNL
001: MAESAVLFHS YSFAAPPSRN ESHEDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKFSQPGS VAQKKAFFEA HYKKIAEAKK AKASDQSSDS
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLSCL MGNTKTQDQK LTIKKRKTSK KPFLCLCFKP EMAGETEAGR
301: QR
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLSCL MGNTKTQDQK LTIKKRKTSK KPFLCLCFKP EMAGETEAGR
301: QR
Arabidopsis Description
At5g40700 [Source:UniProtKB/TrEMBL;Acc:Q5PP69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.