CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16238	Canola	nucleus	34.22	17.79
CDY14672	Canola	nucleus	31.56	16.73
CDY11620	Canola	nucleus	28.52	15.31
CDY38790	Canola	nucleus	6.08	11.51
CDX99631	Canola	cytosol	5.32	9.66
VIT_07s0005g05560.t01	Wine grape	mitochondrion, plastid	3.04	9.41
CDY46410	Canola	cytosol	5.7	9.2
CDX83685	Canola	nucleus	7.98	8.43
CDY38789	Canola	nucleus	8.75	7.72
CDY25766	Canola	nucleus	10.65	7.55
CDY42558	Canola	nucleus	8.37	7.51
CDY36374	Canola	nucleus	9.13	7.14
CDX91933	Canola	nucleus	8.75	7.1
CDY32377	Canola	nucleus	7.6	6.78
CDY13707	Canola	nucleus	6.46	6.69
CDY33408	Canola	nucleus	9.13	6.45
CDY12493	Canola	nucleus	7.22	6.07
CDX74313	Canola	nucleus	9.13	6.0
CDX67471	Canola	nucleus	6.84	5.9
CDY11706	Canola	nucleus	6.84	5.9
CDY34153	Canola	nucleus	6.08	5.73
CDY48358	Canola	nucleus	5.7	5.38
CDX72762	Canola	nucleus	8.75	5.07
CDX96289	Canola	nucleus	9.13	4.95
KRG97481	Soybean	nucleus	12.17	4.89
KRH31410	Soybean	nucleus	11.41	4.85
CDY15926	Canola	plastid	4.56	4.84
CDY40987	Canola	nucleus	9.89	4.52
CDX99732	Canola	nucleus	9.13	4.49

Protein Annotations

EnsemblPlants:CDY46409	EnsemblPlantsGene:GSBRNA2T00083954001	PANTHER:PTHR31358	PANTHER:PTHR31358:SF17	ProteinID:CDY46409	ProteinID:CDY46409.1
SEG:seg	UniParc:UPI0004EEBA7D	UniProt:A0A078IAS7	MapMan:35.2	:	:

Description

BnaA08g20210DBnaA08g20210D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078IAS7]

Coordinates

chrLK032666:-:74..1213

Molecular Weight (calculated)

29282.1 Da

IEP (calculated)

10.818

GRAVY (calculated)

-0.976

Length

263 amino acids

Sequence
(BLAST)

001: MEEKPEEVLQ IGEKVVSNET NETPMKEMEI EKPSKLTKKD VNVVINLTRN SPKPNQVRTK QTTNKIATSK KTPPSKEFKN MMKLTKKPPA TISNASTPRV
101: YKPASNTTPL STVKKENVSS SLLRNKQTAS KSLHMSMSLG PSTSDPSSLT STRKSLIMER MGDKDIVKRA FKTFQKSYVF TSSVDEQKQS PAKATSIPSC
201: QKENGRPTKS SCLEKRSGSS AIRSSSYGLK SNNTAENKQK ELFKSDARPV EKTRLLKNSK VYK

Best Arabidopsis Sequence Match ( AT1G24160.1 )
(BLAST)

001: MGDMQVGVAT IDDKGFYGLM EDTQVKAVAS SNPSLQVSVS FGRFENDSLS WEKFSAFSPN KYLEEVGKCA TPGSVAQKKA YFEAHYKKIA ERKAEIIDQE
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL

Arabidopsis Description

F3I6.9 protein [Source:UniProtKB/TrEMBL;Acc:O48683]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.