CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015186.1-P	Field mustard	nucleus	62.9	76.47
CDY32377	Canola	nucleus	45.43	57.29
CDX91933	Canola	nucleus	45.97	52.78
CDX74313	Canola	nucleus	55.65	51.75
AT3G01710.3	Thale cress	nucleus	40.05	36.34
CDX99631	Canola	cytosol	12.9	33.1
CDY46410	Canola	cytosol	11.56	26.38
CDY34153	Canola	nucleus	18.82	25.09
CDY42558	Canola	nucleus	18.82	23.89
CDY48358	Canola	nucleus	17.74	23.66
CDY13707	Canola	nucleus	16.13	23.62
CDX83685	Canola	nucleus	15.59	23.29
CDY36374	Canola	nucleus	20.43	22.62
CDY11706	Canola	nucleus	18.28	22.3
PGSC0003DMT400017939	Potato	nucleus	29.3	21.98
CDX67471	Canola	nucleus	17.74	21.64
Solyc02g067950.2.1	Tomato	extracellular	28.49	21.37
Solyc02g093720.2.1	Tomato	nucleus	28.49	21.16
PGSC0003DMT400032926	Potato	nucleus	28.76	20.94
KRH07049	Soybean	nucleus	25.81	19.24
VIT_14s0219g00090.t01	Wine grape	nucleus	28.76	18.87
KRH57609	Soybean	nucleus	31.18	18.65
CDY38789	Canola	nucleus	13.71	17.11
KRG94005	Soybean	nucleus	27.69	15.65
CDX72762	Canola	nucleus	19.09	15.64
CDY25766	Canola	nucleus	15.05	15.09
CDX96289	Canola	nucleus	19.09	14.64
CDY15926	Canola	plastid	9.68	14.52
CDY38790	Canola	nucleus	5.11	13.67
CDY16238	Canola	nucleus	17.74	13.04
CDY14672	Canola	nucleus	17.2	12.9
CDY11620	Canola	nucleus	15.59	11.84
CDX99732	Canola	nucleus	15.86	11.05
CDY40987	Canola	nucleus	16.4	10.61
CDY12493	Canola	nucleus	8.33	9.9
CDY46409	Canola	nucleus	6.45	9.13

Protein Annotations

EnsemblPlants:CDY33408	EnsemblPlantsGene:GSBRNA2T00054300001	ncoils:Coil	PANTHER:PTHR31358	PANTHER:PTHR31358:SF12	ProteinID:CDY33408
ProteinID:CDY33408.1	SEG:seg	UniParc:UPI0004EEC622	UniProt:A0A078H977	MapMan:35.2	:

Description

BnaA07g04310DBnaA07g04310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H977]

Coordinates

chrLK032313:-:392584..395278

Molecular Weight (calculated)

41956.9 Da

IEP (calculated)

10.113

GRAVY (calculated)

-0.814

Length

372 amino acids

Sequence
(BLAST)

001: MGESACLMQP FSYAAPQGDS LGALGQSVSF GRFMSEKIDW EKWSSFPTQN RYVAETERYS RPGSVAQKKA FFEAHYKKLA AARKAAPEEA LLLRQLTSDE
101: LVPVQEDING VGKKESDPVL EIPRASLDAE MKVVAEKVSM SGNRQSDEKE KRGKDKSEIN GKGSTVKEEQ QLFAEEEIQI KEAQPKSSTK PRVSKLNISE
201: RTPSQKPSSN KSSSYNFTPA KEFNRLVSMI RKIDGSTRAS CSSKLQTKEC KTPLRTPSSN NKVSAKGIVE DSLFTTPLSS NRREVTHQVL KVNAELMILL
301: PRQTLEEKFK AMEAHKEKER NVEKEESKLR QRLCFKAKPL PIFYKQRPQS TDQTKKVSSS SFIFKCYAKE HI

Best Arabidopsis Sequence Match ( AT3G01710.3 )
(BLAST)

001: MGESACLMQP FSYAAPQGDS LGALGQSVSF GRFMSEKLDW EKWSAFSTQN PYVAEAERYS KPGSVAQKKA FFEAHYKKVA AARKAAAEEA LLLQQQIPKP
101: QPEKSPVQEE DINEGEKKDW MVSKPDLEIP RGSLDVSAQL KLLAEKEGRF SNRQSDEKEN CGMAESEING RTAEEQVDEE KPILKSVKKK SKDSQPKSST
201: KPRVSKYNSS ERTPSKKSNN KSSSYTFTPA KEFNRLVSII RKIDGSRASS KPTKDCKTPL RTPSNKVSAK GMVEDSLSTP LSSNTRGKIA PNSSAKTGRG
301: RWNFLPAETP SCFTPFGLRT EERAERRKKK LEGKFKEMET QNQKAEERSV EKEESKLRQR LCFKAKPLPN FYKQRPKSTD QTKKVSLLSL IAKCMCEVLK
401: EKDSSHRFCV

Arabidopsis Description

TPX2 (Targeting protein for Xklp2) protein family [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.