Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016172.1-P | Field mustard | nucleus | 86.34 | 81.5 |
| CDX96289 | Canola | nucleus | 84.8 | 79.38 |
| AT1G70950.1 | Thale cress | nucleus | 38.33 | 36.4 |
| CDY46410 | Canola | cytosol | 9.91 | 27.61 |
| CDX99631 | Canola | cytosol | 8.59 | 26.9 |
| CDY25766 | Canola | nucleus | 18.72 | 22.91 |
| VIT_01s0011g04850.t01 | Wine grape | nucleus | 29.3 | 22.43 |
| CDY38789 | Canola | nucleus | 14.1 | 21.48 |
| KRH50366 | Soybean | nucleus | 28.19 | 20.91 |
| CDX83685 | Canola | nucleus | 11.45 | 20.88 |
| CDY13707 | Canola | nucleus | 11.23 | 20.08 |
| CDX91933 | Canola | nucleus | 13.66 | 19.14 |
| CDY33408 | Canola | nucleus | 15.64 | 19.09 |
| KRG89293 | Soybean | nucleus | 25.99 | 18.5 |
| CDY32377 | Canola | nucleus | 11.67 | 17.97 |
| CDY42558 | Canola | nucleus | 11.45 | 17.75 |
| CDY36374 | Canola | nucleus | 13.0 | 17.56 |
| CDY11620 | Canola | nucleus | 18.72 | 17.35 |
| CDY48358 | Canola | nucleus | 10.57 | 17.2 |
| CDY34153 | Canola | nucleus | 10.35 | 16.85 |
| CDY11706 | Canola | nucleus | 11.23 | 16.72 |
| Solyc05g008090.2.1 | Tomato | nucleus | 24.89 | 16.5 |
| PGSC0003DMT400078339 | Potato | nucleus | 24.23 | 16.13 |
| CDX67471 | Canola | nucleus | 10.79 | 16.07 |
| CDX74313 | Canola | nucleus | 13.66 | 15.5 |
| CDY14672 | Canola | nucleus | 16.08 | 14.72 |
| CDY16238 | Canola | nucleus | 16.3 | 14.62 |
| CDX99732 | Canola | nucleus | 16.74 | 14.23 |
| CDY40987 | Canola | nucleus | 16.74 | 13.22 |
| CDY15926 | Canola | plastid | 5.51 | 10.08 |
| CDY38790 | Canola | nucleus | 2.86 | 9.35 |
| CDY46409 | Canola | nucleus | 5.07 | 8.75 |
| CDY12493 | Canola | nucleus | 5.95 | 8.63 |
Protein Annotations
| EnsemblPlants:CDX72762 | EnsemblPlantsGene:GSBRNA2T00103138001 | InterPro:TPX2_C | ncoils:Coil | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF28 |
| PFAM:PF06886 | ProteinID:CDX72762 | ProteinID:CDX72762.1 | SEG:seg | UniParc:UPI0004EE2D0E | MapMan:20.1.5.2 |
Description
BnaC06g32100D
Coordinates
chrLK031797:+:85746..88065
Molecular Weight (calculated)
50972.3 Da
IEP (calculated)
6.445
GRAVY (calculated)
-0.957
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDTMAGSEI QEPISLGFQE SSIHSGSISF GRFEEEGLSW EKRSSFSHNR YLEEVDKCSK PGSVTEMKAH FEAHFKKRGM RLPSSIESQT WGVRQTGDDA
101: TESFEDYRSD GSFSDNTSRS QSPCNYILDQ GKSQCEYVEE SDLCVSYDEI VVNSDDVIEL DEEGGATLYV PLDNDEVVPV ECISIKEVRC EVLGQQEMPL
201: EIEVRDDDED KEHCAEVQET ESRLVEHVPE KASDVTERSS SACEPKSLPN VKPIIPKRHD VTPKAVSGRT KGSYLSANSK TNVDDAKSQK ELRPKKTVES
301: RPSTSKKIET RTPLATNRPK TGSYSAKLEM STGATSFRFK CSERAEKRKE FYMKLEEKIH AKKTETNQVQ AKTQQKAEAE MKQFRKSLNF KATPMPSFYN
401: TVTRPVSRYK TEPSKVAPSR PRSTTSASST NRRVSRVGDK HGTEEGKMVK GNGG
101: TESFEDYRSD GSFSDNTSRS QSPCNYILDQ GKSQCEYVEE SDLCVSYDEI VVNSDDVIEL DEEGGATLYV PLDNDEVVPV ECISIKEVRC EVLGQQEMPL
201: EIEVRDDDED KEHCAEVQET ESRLVEHVPE KASDVTERSS SACEPKSLPN VKPIIPKRHD VTPKAVSGRT KGSYLSANSK TNVDDAKSQK ELRPKKTVES
301: RPSTSKKIET RTPLATNRPK TGSYSAKLEM STGATSFRFK CSERAEKRKE FYMKLEEKIH AKKTETNQVQ AKTQQKAEAE MKQFRKSLNF KATPMPSFYN
401: TVTRPVSRYK TEPSKVAPSR PRSTTSASST NRRVSRVGDK HGTEEGKMVK GNGG
001: MAGEIQDPFS LSFQGNSIHS GSISFGRFEK EGLSWEKRSS FSHNRYLEEV DKCSKPGSVT EMKAHFEAHF KKKGIRFPAS LESQTWGVHQ TSNEPDDEAV
101: HATESFEDYR SDGSFSEDTS QSNSVCNYSH EQEKCGQGKS QCEFDEESDH CVSYDEILVN SDEVIELDEE EGGGDHGRVA DLVECENLGP PEMPQEIVIQ
201: DSALVEEAGS KLDEHASKKP SNSMETPSSS VNVKPIIPND VRVTKASTKG HDVTPKAASR RTKGSSLSSN SKTNVDAKSQ KELRPKKTIE SQPKSSNKTE
301: TRPPIATNRC KTSTTSSKLE MSTGSTSFRF KCSERAEKRK EFYMKLEEKI HAKKTETNQV QAKTQQKAEA EIKQFRKSLN FKATPMPSFY NIGTRPVSHN
401: KTEPSKVAQS RSRPATSASI TNRAVTRVSY KHGFEEAEMV KVMVSNRKQS AAKDSDLQKG NLMAVEMKQQ IGARRSRN
101: HATESFEDYR SDGSFSEDTS QSNSVCNYSH EQEKCGQGKS QCEFDEESDH CVSYDEILVN SDEVIELDEE EGGGDHGRVA DLVECENLGP PEMPQEIVIQ
201: DSALVEEAGS KLDEHASKKP SNSMETPSSS VNVKPIIPND VRVTKASTKG HDVTPKAASR RTKGSSLSSN SKTNVDAKSQ KELRPKKTIE SQPKSSNKTE
301: TRPPIATNRC KTSTTSSKLE MSTGSTSFRF KCSERAEKRK EFYMKLEEKI HAKKTETNQV QAKTQQKAEA EIKQFRKSLN FKATPMPSFY NIGTRPVSHN
401: KTEPSKVAQS RSRPATSASI TNRAVTRVSY KHGFEEAEMV KVMVSNRKQS AAKDSDLQKG NLMAVEMKQQ IGARRSRN
Arabidopsis Description
WDL7Protein WVD2-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q67Y69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.