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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96289 Canola nucleus 95.22 94.43
CDX72762 Canola nucleus 81.5 86.34
AT1G70950.1 Thale cress nucleus 38.67 38.91
Bra025270.1-P Field mustard nucleus 12.27 23.32
VIT_01s0011g04850.t01 Wine grape nucleus 28.48 23.1
KRH50366 Soybean nucleus 29.11 22.88
Bra000994.1-P Field mustard nucleus 14.55 19.83
KRG89293 Soybean nucleus 26.2 19.75
Bra025552.1-P Field mustard nucleus 12.06 19.66
Bra015186.1-P Field mustard nucleus 12.27 19.28
Bra033005.1-P Field mustard nucleus 10.39 17.92
Bra028471.1-P Field mustard nucleus 11.23 17.7
PGSC0003DMT400078339 Potato nucleus 24.74 17.45
Bra024641.1-P Field mustard nucleus 18.3 17.43
Solyc05g008090.2.1 Tomato nucleus 23.49 16.5
Bra016236.1-P Field mustard nucleus 16.42 16.39
Bra016318.1-P Field mustard nucleus 16.01 15.78
Bra036350.1-P Field mustard nucleus 14.55 12.57
Bra012357.1-P Field mustard nucleus 6.65 9.79
Protein Annotations
EnsemblPlants:Bra016172.1EnsemblPlants:Bra016172.1-PEnsemblPlantsGene:Bra016172InterPro:TPX2_Cncoils:CoilPANTHER:PTHR31358
PANTHER:PTHR31358:SF28PFAM:PF06886SEG:segUniParc:UPI00025412D6UniProt:M4DI45MapMan:20.1.5.2
Description
AT1G70950 (E=9e-169) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23060.1); Has 875 Blast hits to 771 proteins in 143 species: Archae - 0; Bacteria - 102; Metazoa - 281; Fungi - 65; Plants - 205; Viruses - 3; Other Eukaryotes - 219 (source: NCBI BLink).
Coordinates
chrA07:+:19056227..19058538
Molecular Weight (calculated)
53681.5 Da
IEP (calculated)
7.474
GRAVY (calculated)
-0.943
Length
481 amino acids
Sequence
(BLAST)
001: MAGSEIQEPF SLSFQESSIH SGSISFGRFE EEGLSWEKRS SFSHNRYLEE VDKCSKPGSV TEMKAHFEAH FKKRGMRLPS SIESQTWGVR QTDDDATESF
101: EDYRSDGSFS DNTSRSQSPC NYILDQGKSQ CEYVEESDHC VSYDEIVVNS DDVIELDEEG GVTLDVSLDN DEVVPVECIS IKEVRSEVLG PQEMPLEIEV
201: RDDDEDKKHC AEVQETESRL VEHVPEKASD VTERPSSACE PKSLPNAKPI IPKAVDVTPK AVSGRTKGSY LSANSKTKVD DAKSQKELRP KKTVESRPST
301: SKKIETRTPL ATNRPKTGSY SAKLEMCTGA TSFRFKCSER AEKRKEFYMK LEEKIHAKKT ETNQVQAKTQ QKAEAEIKQF RKSLNFKATP MPSFYNTATR
401: PVSRYKTEPS KVAPSRPRST TSASSTNRRV SRVGDKHGTE EGKMVKATVG NRKPSAAKDS GLQKGNFMAV ETKQKVGKSG N
Best Arabidopsis Sequence Match ( AT1G70950.1 )
(BLAST)
001: MAGEIQDPFS LSFQGNSIHS GSISFGRFEK EGLSWEKRSS FSHNRYLEEV DKCSKPGSVT EMKAHFEAHF KKKGIRFPAS LESQTWGVHQ TSNEPDDEAV
101: HATESFEDYR SDGSFSEDTS QSNSVCNYSH EQEKCGQGKS QCEFDEESDH CVSYDEILVN SDEVIELDEE EGGGDHGRVA DLVECENLGP PEMPQEIVIQ
201: DSALVEEAGS KLDEHASKKP SNSMETPSSS VNVKPIIPND VRVTKASTKG HDVTPKAASR RTKGSSLSSN SKTNVDAKSQ KELRPKKTIE SQPKSSNKTE
301: TRPPIATNRC KTSTTSSKLE MSTGSTSFRF KCSERAEKRK EFYMKLEEKI HAKKTETNQV QAKTQQKAEA EIKQFRKSLN FKATPMPSFY NIGTRPVSHN
401: KTEPSKVAQS RSRPATSASI TNRAVTRVSY KHGFEEAEMV KVMVSNRKQS AAKDSDLQKG NLMAVEMKQQ IGARRSRN
Arabidopsis Description
WDL7Protein WVD2-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q67Y69]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.