Factsheet for Bra033005.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34153	Canola	nucleus	99.64	99.64
CDY48358	Canola	nucleus	90.32	90.32
Bra025270.1-P	Field mustard	nucleus	45.52	50.2
AT3G27350.2	Thale cress	cytosol, nucleus, plastid	50.18	43.89
Bra028471.1-P	Field mustard	nucleus	36.2	33.11
Bra025552.1-P	Field mustard	nucleus	32.62	30.85
Bra015186.1-P	Field mustard	nucleus	25.45	23.2
Bra000994.1-P	Field mustard	nucleus	24.37	19.26
Bra016236.1-P	Field mustard	nucleus	21.86	12.66
Bra016318.1-P	Field mustard	nucleus	19.35	11.07
Bra016172.1-P	Field mustard	nucleus	17.92	10.39
Bra024641.1-P	Field mustard	nucleus	18.28	10.1
Bra036350.1-P	Field mustard	nucleus	17.92	8.98
Bra012357.1-P	Field mustard	nucleus	10.04	8.56
Solyc05g014270.2.1	Tomato	nucleus	20.43	8.56
PGSC0003DMT400031254	Potato	nucleus	19.0	8.22

Protein Annotations

EnsemblPlants:Bra033005.1	EnsemblPlants:Bra033005.1-P	EnsemblPlantsGene:Bra033005	ncoils:Coil	PANTHER:PTHR31358	PANTHER:PTHR31358:SF12
SEG:seg	UniParc:UPI00025455E2	UniProt:M4EW22	MapMan:35.2	:	:

Description

AT3G27350 (E=2e-068) | unknown protein

Coordinates

chrA02:-:21959996..21961452

Molecular Weight (calculated)

32261.9 Da

IEP (calculated)

8.317

GRAVY (calculated)

-1.107

Length

279 amino acids

Sequence
(BLAST)

001: MGESAVLAHS YSFAAPITRT DSHEDHTNHA LNQSISFGKF MTENLEWGKW STFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPTVT
101: PAEVLLQALE TQPPLSLLPE EESTTERKSI QNDDVLVDAV DDEMEVVKEK SECDDKEEEK EQDEELLKEE KTRRSMTKNR PVFRLSLEKT IPPPKPIETR
201: TEVATTPEKT SERPITQISE KNEEKPVHRK KFSFLNCFRG NAKTRDQNQS RKKGKRETKK QKKQFLCLCF KPKTVRRES

Best Arabidopsis Sequence Match ( AT3G27350.1 )
(BLAST)

001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE

Arabidopsis Description

Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.