CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033005.1-P	Field mustard	nucleus	99.64	99.64
CDY48358	Canola	nucleus	90.68	90.68
CDY13707	Canola	nucleus	51.25	56.3
CDX83685	Canola	nucleus	43.37	48.59
CDX99631	Canola	cytosol	24.37	46.9
AT3G27350.2	Thale cress	cytosol, nucleus, plastid	50.18	43.89
CDY11706	Canola	nucleus	36.2	33.11
CDX67471	Canola	nucleus	36.2	33.11
CDY46410	Canola	cytosol	17.2	29.45
CDY42558	Canola	nucleus	30.47	29.01
CDY36374	Canola	nucleus	32.97	27.38
CDY32377	Canola	nucleus	26.16	24.75
CDX91933	Canola	nucleus	26.16	22.53
CDY38789	Canola	nucleus	21.51	20.13
CDY33408	Canola	nucleus	25.09	18.82
CDX74313	Canola	nucleus	26.88	18.75
CDY15926	Canola	plastid	15.41	17.34
CDY25766	Canola	nucleus	17.92	13.48
CDY11620	Canola	nucleus	21.15	12.04
CDY14672	Canola	nucleus	20.79	11.69
CDY16238	Canola	nucleus	20.07	11.07
CDY12493	Canola	nucleus	12.19	10.86
CDX72762	Canola	nucleus	16.85	10.35
CDX99732	Canola	nucleus	19.35	10.11
CDX96289	Canola	nucleus	17.56	10.1
CDY40987	Canola	nucleus	18.64	9.04
Solyc05g014270.2.1	Tomato	nucleus	20.43	8.56
PGSC0003DMT400031254	Potato	nucleus	19.0	8.22
CDY38790	Canola	nucleus	3.58	7.19
CDY46409	Canola	nucleus	5.73	6.08

Protein Annotations

EnsemblPlants:CDY34153	EnsemblPlantsGene:GSBRNA2T00056128001	ncoils:Coil	PANTHER:PTHR31358	PANTHER:PTHR31358:SF12	ProteinID:CDY34153
ProteinID:CDY34153.1	SEG:seg	UniParc:UPI0004EEDC58	UniProt:A0A078HBH5	MapMan:35.2	:

Description

BnaA02g28870DBnaA02g28870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBH5]

Coordinates

chrLK032330:-:43380..45348

Molecular Weight (calculated)

32271.0 Da

IEP (calculated)

8.321

GRAVY (calculated)

-1.106

Length

279 amino acids

Sequence
(BLAST)

001: MGESAVLAHS YSFAAPITRT DSHEDHTNHA LNQSISFGKF MTENLEWGKW STFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPTVT
101: PAEVLLQALE TQPPLSLLPE EESTTERKSI QNDDVLVDAV DDEMEVVKEK SECDDKEEEK EQDEELLKEE KTRRSMTKNR PVFRLSLEKT IPPPKPIETR
201: TEVATTPEKT SERPITQISE KNEEKPVHRK KFSFLNCFRG NAKTRDQNHS RKKGKRETKK QKKQFLCLCF KPKTVRRES

Best Arabidopsis Sequence Match ( AT3G27350.1 )
(BLAST)

001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE

Arabidopsis Description

Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.