Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16238 | Canola | nucleus | 50.0 | 49.01 |
| CDY46410 | Canola | cytosol | 13.71 | 41.72 |
| AT1G24160.1 | Thale cress | nucleus | 44.76 | 41.11 |
| CDY11620 | Canola | nucleus | 37.3 | 37.76 |
| CDY46409 | Canola | nucleus | 16.73 | 31.56 |
| KRH33693 | Soybean | nucleus | 12.9 | 30.05 |
| KRH69438 | Soybean | nucleus | 29.23 | 28.88 |
| CDY38789 | Canola | nucleus | 17.34 | 28.86 |
| KRH45764 | Soybean | nucleus | 27.02 | 27.8 |
| VIT_01s0026g00960.t01 | Wine grape | nucleus | 28.23 | 27.29 |
| CDX99631 | Canola | cytosol | 7.86 | 26.9 |
| KRG99221 | Soybean | nucleus | 25.6 | 26.62 |
| KRH74704 | Soybean | nucleus | 27.62 | 25.23 |
| PGSC0003DMT400004849 | Potato | nucleus | 22.38 | 24.67 |
| CDX83685 | Canola | nucleus | 12.3 | 24.5 |
| KRH16191 | Soybean | nucleus | 17.54 | 23.51 |
| CDY13707 | Canola | nucleus | 11.69 | 22.83 |
| KRG99370 | Soybean | nucleus | 11.09 | 22.73 |
| CDY48358 | Canola | nucleus | 12.1 | 21.51 |
| CDY34153 | Canola | nucleus | 11.69 | 20.79 |
| CDX67471 | Canola | nucleus | 12.3 | 20.0 |
| CDY42558 | Canola | nucleus | 11.49 | 19.45 |
| CDY11706 | Canola | nucleus | 11.9 | 19.34 |
| CDY32377 | Canola | nucleus | 11.29 | 18.98 |
| CDY36374 | Canola | nucleus | 12.7 | 18.75 |
| Solyc04g005060.2.1 | Tomato | nucleus | 13.71 | 18.18 |
| CDY25766 | Canola | nucleus | 13.51 | 18.06 |
| CDX91933 | Canola | nucleus | 11.49 | 17.59 |
| CDX74313 | Canola | nucleus | 13.91 | 17.25 |
| CDY33408 | Canola | nucleus | 12.9 | 17.2 |
| CDY38790 | Canola | nucleus | 4.64 | 16.55 |
| CDX72762 | Canola | nucleus | 14.72 | 16.08 |
| Solyc05g006490.2.1 | Tomato | nucleus | 18.95 | 15.61 |
| PGSC0003DMT400058225 | Potato | nucleus | 18.75 | 15.6 |
| CDX96289 | Canola | nucleus | 14.52 | 14.85 |
| CDY12493 | Canola | nucleus | 7.66 | 12.14 |
| CDX99732 | Canola | nucleus | 11.69 | 10.86 |
| CDY40987 | Canola | nucleus | 11.69 | 10.09 |
| CDY15926 | Canola | plastid | 4.84 | 9.68 |
Protein Annotations
| EnsemblPlants:CDY14672 | EnsemblPlantsGene:GSBRNA2T00084458001 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF17 | ProteinID:CDY14672 | ProteinID:CDY14672.1 |
| SEG:seg | UniParc:UPI0004EEF556 | UniProt:A0A078FP77 | MapMan:35.2 | : | : |
Description
BnaC05g19290DBnaC05g19290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FP77]
Coordinates
chrLK032046:-:123571..126368
Molecular Weight (calculated)
54533.0 Da
IEP (calculated)
10.180
GRAVY (calculated)
-0.848
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDMQVGVAN IDDKGFYGMM EDKPGASSNP TLQVSVSFGR FENDSLSWEK FSAFSPNKYL EEVGKCATPG SVAQKKAYFE AHYKKIAERK AEIMDQEKLM
101: DDKKASFRSV VIDQWSMGGE VGGSVTESVV DTEEDKHVTD IAAEVKELSV NVETIIVKEC QSSVDEVKEE VKNSLDSPRL EKPEEEVLLM DEKEETEVRE
201: NVDTTANTNE TPMKEMEKEK TQKLIKKGGN MGINRTRNSP KPDQVKTKPA TNKIATSKKT PPSKEIKNMV KPTKKPAAPV SKAPPGFSTP RVYKPASKIP
301: SLSTSQSSVK KEKPSFLLRN KQTAPKSLHM SMSLGPSSAS DPSALTSTRK SLIMERMGDK DIVKRAFKSF QKSYDLGASV DEQKPALKQN PAKTTSIPSV
401: ATRHKENGRP AKASGMEKRS STSGHDYSAS RGLKSNVTVE KQQKELSSSG ARPVDKTRLQ KNPKGGVVDA KTKRESLNPK AKPVRILPKV SSEKML
101: DDKKASFRSV VIDQWSMGGE VGGSVTESVV DTEEDKHVTD IAAEVKELSV NVETIIVKEC QSSVDEVKEE VKNSLDSPRL EKPEEEVLLM DEKEETEVRE
201: NVDTTANTNE TPMKEMEKEK TQKLIKKGGN MGINRTRNSP KPDQVKTKPA TNKIATSKKT PPSKEIKNMV KPTKKPAAPV SKAPPGFSTP RVYKPASKIP
301: SLSTSQSSVK KEKPSFLLRN KQTAPKSLHM SMSLGPSSAS DPSALTSTRK SLIMERMGDK DIVKRAFKSF QKSYDLGASV DEQKPALKQN PAKTTSIPSV
401: ATRHKENGRP AKASGMEKRS STSGHDYSAS RGLKSNVTVE KQQKELSSSG ARPVDKTRLQ KNPKGGVVDA KTKRESLNPK AKPVRILPKV SSEKML
001: MGDMQVGVAT IDDKGFYGLM EDTQVKAVAS SNPSLQVSVS FGRFENDSLS WEKFSAFSPN KYLEEVGKCA TPGSVAQKKA YFEAHYKKIA ERKAEIIDQE
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL
Arabidopsis Description
F3I6.9 protein [Source:UniProtKB/TrEMBL;Acc:O48683]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.