CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46409	Canola	nucleus	11.51	6.08
VIT_07s0005g05560.t01	Wine grape	mitochondrion, plastid	3.6	5.88
CDY42558	Canola	nucleus	12.23	5.8
CDY16238	Canola	nucleus	20.14	5.53
CDY46410	Canola	cytosol	6.47	5.52
CDY11706	Canola	nucleus	11.51	5.25
CDY33408	Canola	nucleus	13.67	5.11
CDX83685	Canola	nucleus	8.63	4.82
CDY12493	Canola	nucleus	10.79	4.79
CDY32377	Canola	nucleus	10.07	4.75
CDY11620	Canola	nucleus	16.55	4.69
CDY14672	Canola	nucleus	16.55	4.64
CDX67471	Canola	nucleus	10.07	4.59
CDY13707	Canola	nucleus	7.91	4.33
CDX91933	Canola	nucleus	10.07	4.32
CDX74313	Canola	nucleus	12.23	4.25
CDY25766	Canola	nucleus	10.79	4.04
CDY36374	Canola	nucleus	9.35	3.87
CDY34153	Canola	nucleus	7.19	3.58
CDX99732	Canola	nucleus	13.67	3.56
CDY15926	Canola	plastid	5.76	3.23
CDY48358	Canola	nucleus	6.47	3.23
CDY40987	Canola	nucleus	12.95	3.13
KRG97481	Soybean	nucleus	13.67	2.91
CDX72762	Canola	nucleus	9.35	2.86
CDX99631	Canola	cytosol	2.88	2.76
CDY38789	Canola	nucleus	5.76	2.68
KRH31410	Soybean	nucleus	10.79	2.43
CDX96289	Canola	nucleus	7.91	2.27

Protein Annotations

EnsemblPlants:CDY38790	EnsemblPlantsGene:GSBRNA2T00066593001	PANTHER:PTHR31358	PANTHER:PTHR31358:SF17	ProteinID:CDY38790	ProteinID:CDY38790.1
UniParc:UPI0004EDE6F7	UniProt:A0A078HJV1	MapMan:35.2	:	:	:

Description

BnaA07g28620DBnaA07g28620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJV1]

Coordinates

chrLK032432:+:255203..256481

Molecular Weight (calculated)

15196.3 Da

IEP (calculated)

11.152

GRAVY (calculated)

-0.953

Length

139 amino acids

Sequence
(BLAST)

001: MERMGDKEIV RRAFKTFQKS FDQVKPSQDT APKQVPAKAT SVSKLATTGL KDNGRLAKSD GTEKKCSNSH CSSSFVPKSI RTAEKQELSK PGARGVERIR
101: LPAKPKAEVT NAKTRRQSLD PKAKSMRGPL PKGSSDKVL

Best Arabidopsis Sequence Match ( AT1G70100.6 )
(BLAST)

001: MVDMEVGIAS GEDKITTAAS SNQELQVSVS FGKFENDSLS WEKFSSFSPN KYLEEVEKCA TAGSVAQKKA YFESHYKKIA ERRADIIMEQ EKLLERNASF
101: RPNIQNRERT DDSDNDESMM IEFSTGYGSN GESTSEEDKL VTVIVTEVNE TCNHKPLEET MDFKECRSSV DTGDDLSTLK LEEKLEEIVQ VEDKEKVEEV
201: ICMKEEVKED VPSKDTGEMS ETLMKETKKE KDHNPIKKTD KNVRTNHMRA SPKSNQVTKK PVTSKVVSGR KTQPSKEKSM TKATNKAASP VLKPPGFSTP
301: RVSKSASTIS SMSTSRSSVK KESVSTLLRK KQTAPKSLPI SLNVDQSVSD PTAVPTTRKS LIMERMGDKD IVRRAFKSFQ KSFDQMKSTD DGQDTAPKQV
401: LAKATAVQRL GTTGQKNVRL AKSDGTERKG PNSHRSSSVV SKSNGTAEKQ KDPSRLGTRA VERIHLQAKP KAEASNVKTR RQSLNPKENP IQGPLPKGYS
501: DKVL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits to 2309 proteins in 344 species: Archae - 6; Bacteria - 672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses - 37; Other Eukaryot /.../83 (source: NCBI BLink). [Source:TAIR;Acc:AT1G70100]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.