Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY42558 | Canola | nucleus | 60.69 | 30.03 |
CDY15926 | Canola | plastid | 51.03 | 29.84 |
CDX67471 | Canola | nucleus | 60.0 | 28.52 |
CDX83685 | Canola | nucleus | 48.97 | 28.51 |
CDY11706 | Canola | nucleus | 59.31 | 28.2 |
CDY13707 | Canola | nucleus | 48.28 | 27.56 |
CDY36374 | Canola | nucleus | 60.0 | 25.89 |
CDY48358 | Canola | nucleus | 48.28 | 25.09 |
CDY34153 | Canola | nucleus | 46.9 | 24.37 |
AT5G40700.2 | Thale cress | nucleus, plastid | 50.34 | 24.09 |
CDY46410 | Canola | cytosol | 26.21 | 23.31 |
CDY32377 | Canola | nucleus | 33.1 | 16.27 |
CDX91933 | Canola | nucleus | 33.1 | 14.81 |
CDY38789 | Canola | nucleus | 29.66 | 14.43 |
CDY33408 | Canola | nucleus | 33.1 | 12.9 |
CDX74313 | Canola | nucleus | 35.17 | 12.75 |
CDY25766 | Canola | nucleus | 24.83 | 9.7 |
CDY11620 | Canola | nucleus | 31.72 | 9.39 |
CDX72762 | Canola | nucleus | 26.9 | 8.59 |
CDX96289 | Canola | nucleus | 26.9 | 8.04 |
CDY14672 | Canola | nucleus | 26.9 | 7.86 |
CDY16238 | Canola | nucleus | 26.21 | 7.51 |
PGSC0003DMT400031254 | Potato | nucleus | 33.1 | 7.44 |
CDX99732 | Canola | nucleus | 24.83 | 6.74 |
CDY40987 | Canola | nucleus | 24.14 | 6.09 |
Solyc05g014270.2.1 | Tomato | nucleus | 27.59 | 6.01 |
CDY46409 | Canola | nucleus | 9.66 | 5.32 |
CDY12493 | Canola | nucleus | 11.03 | 5.11 |
CDY38790 | Canola | nucleus | 2.76 | 2.88 |
Protein Annotations
EnsemblPlants:CDX99631 | EnsemblPlantsGene:GSBRNA2T00108139001 | ncoils:Coil | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF12 | ProteinID:CDX99631 |
ProteinID:CDX99631.1 | SEG:seg | UniParc:UPI0004EDB83F | MapMan:35.2 | : | : |
Description
BnaC04g33880D
Coordinates
chrLK031912:+:495598..496341
Molecular Weight (calculated)
16462.0 Da
IEP (calculated)
5.300
GRAVY (calculated)
-0.570
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESAVLFHS YLFAAPLSRH ESHEDNTIHA LSQSVSFGRF TTESLEWGKW SSFSHKKYVD EAEKYSQPGS VAQKKAFFDV VIEVLDGLEE KENHAEDESS
101: SVEEERKSVT KNSSLFRSEA PDKAMELVVT RKTRYIKAAF DCSFL
101: SVEEERKSVT KNSSLFRSEA PDKAMELVVT RKTRYIKAAF DCSFL
001: MAESAVLFHS YSFAAPPSRN ESHEDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKFSQPGS VAQKKAFFEA HYKKIAEAKK AKASDQSSDS
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLR
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLR
Arabidopsis Description
At5g40700 [Source:UniProtKB/TrEMBL;Acc:Q5PP69]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.