Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42558 Canola nucleus 60.69 30.03
CDY15926 Canola plastid 51.03 29.84
CDX67471 Canola nucleus 60.0 28.52
CDX83685 Canola nucleus 48.97 28.51
CDY11706 Canola nucleus 59.31 28.2
CDY13707 Canola nucleus 48.28 27.56
CDY36374 Canola nucleus 60.0 25.89
CDY48358 Canola nucleus 48.28 25.09
CDY34153 Canola nucleus 46.9 24.37
AT5G40700.2 Thale cress nucleus, plastid 50.34 24.09
CDY46410 Canola cytosol 26.21 23.31
CDY32377 Canola nucleus 33.1 16.27
CDX91933 Canola nucleus 33.1 14.81
CDY38789 Canola nucleus 29.66 14.43
CDY33408 Canola nucleus 33.1 12.9
CDX74313 Canola nucleus 35.17 12.75
CDY25766 Canola nucleus 24.83 9.7
CDY11620 Canola nucleus 31.72 9.39
CDX72762 Canola nucleus 26.9 8.59
CDX96289 Canola nucleus 26.9 8.04
CDY14672 Canola nucleus 26.9 7.86
CDY16238 Canola nucleus 26.21 7.51
PGSC0003DMT400031254 Potato nucleus 33.1 7.44
CDX99732 Canola nucleus 24.83 6.74
CDY40987 Canola nucleus 24.14 6.09
Solyc05g014270.2.1 Tomato nucleus 27.59 6.01
CDY46409 Canola nucleus 9.66 5.32
CDY12493 Canola nucleus 11.03 5.11
CDY38790 Canola nucleus 2.76 2.88
Protein Annotations
EnsemblPlants:CDX99631EnsemblPlantsGene:GSBRNA2T00108139001ncoils:CoilPANTHER:PTHR31358PANTHER:PTHR31358:SF12ProteinID:CDX99631
ProteinID:CDX99631.1SEG:segUniParc:UPI0004EDB83FMapMan:35.2::
Description
BnaC04g33880D
Coordinates
chrLK031912:+:495598..496341
Molecular Weight (calculated)
16462.0 Da
IEP (calculated)
5.300
GRAVY (calculated)
-0.570
Length
145 amino acids
Sequence
(BLAST)
001: MGESAVLFHS YLFAAPLSRH ESHEDNTIHA LSQSVSFGRF TTESLEWGKW SSFSHKKYVD EAEKYSQPGS VAQKKAFFDV VIEVLDGLEE KENHAEDESS
101: SVEEERKSVT KNSSLFRSEA PDKAMELVVT RKTRYIKAAF DCSFL
Best Arabidopsis Sequence Match ( AT5G40700.3 )
(BLAST)
001: MAESAVLFHS YSFAAPPSRN ESHEDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKFSQPGS VAQKKAFFEA HYKKIAEAKK AKASDQSSDS
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLR
Arabidopsis Description
At5g40700 [Source:UniProtKB/TrEMBL;Acc:Q5PP69]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.