Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028471.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY11706 | Canola | nucleus | 93.44 | 93.44 |
| CDX99631 | Canola | cytosol | 28.52 | 60.0 |
| CDY42558 | Canola | nucleus | 48.2 | 50.17 |
| CDY36374 | Canola | nucleus | 46.23 | 41.96 |
| CDY13707 | Canola | nucleus | 33.11 | 39.76 |
| CDX83685 | Canola | nucleus | 30.49 | 37.35 |
| AT5G40700.2 | Thale cress | nucleus, plastid | 36.72 | 36.96 |
| CDY34153 | Canola | nucleus | 33.11 | 36.2 |
| CDY48358 | Canola | nucleus | 33.11 | 36.2 |
| CDY46410 | Canola | cytosol | 14.75 | 27.61 |
| CDY15926 | Canola | plastid | 21.31 | 26.21 |
| CDY32377 | Canola | nucleus | 22.95 | 23.73 |
| CDX91933 | Canola | nucleus | 23.61 | 22.22 |
| CDY38789 | Canola | nucleus | 18.36 | 18.79 |
| CDX74313 | Canola | nucleus | 23.28 | 17.75 |
| CDY33408 | Canola | nucleus | 21.64 | 17.74 |
| CDY25766 | Canola | nucleus | 16.72 | 13.75 |
| CDY14672 | Canola | nucleus | 20.0 | 12.3 |
| CDY11620 | Canola | nucleus | 18.69 | 11.63 |
| CDY16238 | Canola | nucleus | 19.02 | 11.46 |
| CDX96289 | Canola | nucleus | 18.03 | 11.34 |
| CDX72762 | Canola | nucleus | 16.07 | 10.79 |
| PGSC0003DMT400031254 | Potato | nucleus | 21.64 | 10.23 |
| CDY38790 | Canola | nucleus | 4.59 | 10.07 |
| CDY40987 | Canola | nucleus | 16.39 | 8.7 |
| Solyc05g014270.2.1 | Tomato | nucleus | 18.03 | 8.26 |
| CDX99732 | Canola | nucleus | 14.43 | 8.24 |
| CDY12493 | Canola | nucleus | 7.87 | 7.67 |
| CDY46409 | Canola | nucleus | 5.9 | 6.84 |
Protein Annotations
| EnsemblPlants:CDX67471 | EnsemblPlantsGene:GSBRNA2T00098575001 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF12 | ProteinID:CDX67471 | ProteinID:CDX67471.1 |
| SEG:seg | UniParc:UPI0002543323 | MapMan:35.2 | : | : | : |
Description
BnaA07g15110D
Coordinates
chrLK031787:-:432369..433840
Molecular Weight (calculated)
34351.4 Da
IEP (calculated)
5.242
GRAVY (calculated)
-0.797
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESAVLFHS HSFAAPLSRH ETHQDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKYSQPGS VAQKKAFFDA HYKKIAEAKK AKAASDDSKQ
101: EEQQPESVAV LLNTLETLTK DEVKEEEESG ETELVLGGEE AVLSIEKDEE EPERTSVVVV LEQEDTVVDN SVIADDLKAL LEVLDENHIE DAELLKKSSS
201: VGEKEEERKS VTKISPVSMD KSEAPKKAME LVVSQKISEK PATHSSMKKN KFSFLKLLMG NTKTQDQNPK RKTDKKPNKM FLCLCFNPEM VRETEGPTKT
301: QRKNL
101: EEQQPESVAV LLNTLETLTK DEVKEEEESG ETELVLGGEE AVLSIEKDEE EPERTSVVVV LEQEDTVVDN SVIADDLKAL LEVLDENHIE DAELLKKSSS
201: VGEKEEERKS VTKISPVSMD KSEAPKKAME LVVSQKISEK PATHSSMKKN KFSFLKLLMG NTKTQDQNPK RKTDKKPNKM FLCLCFNPEM VRETEGPTKT
301: QRKNL
001: MAESAVLFHS YSFAAPPSRN ESHEDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKFSQPGS VAQKKAFFEA HYKKIAEAKK AKASDQSSDS
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLSCL MGNTKTQDQK LTIKKRKTSK KPFLCLCFKP EMAGETEAGR
301: QR
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLSCL MGNTKTQDQK LTIKKRKTSK KPFLCLCFKP EMAGETEAGR
301: QR
Arabidopsis Description
At5g40700 [Source:UniProtKB/TrEMBL;Acc:Q5PP69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.