Factsheet for PGSC0003DMT400031254

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014270.2.1	Tomato	nucleus	39.69	38.44
CDX99631	Canola	cytosol	7.44	33.1
Zm00001d024922_P001	Maize	nucleus	4.65	29.41
PGSC0003DMT400032926	Potato	nucleus	18.91	23.87
AT5G40700.2	Thale cress	nucleus, plastid	11.16	23.76
CDY13707	Canola	nucleus	8.99	22.83
CDY42558	Canola	nucleus	10.08	22.18
Bra025552.1-P	Field mustard	nucleus	9.92	21.69
CDX83685	Canola	nucleus	8.37	21.69
CDX67471	Canola	nucleus	10.23	21.64
Bra028471.1-P	Field mustard	nucleus	10.23	21.64
CDY11706	Canola	nucleus	10.08	21.31
HORVU2Hr1G014490.1	Barley	plastid	6.05	21.31
PGSC0003DMT400017939	Potato	nucleus	16.12	20.97
Bra025270.1-P	Field mustard	nucleus	8.06	20.55
CDY36374	Canola	nucleus	10.39	19.94
CDY48358	Canola	nucleus	8.53	19.71
Bra033005.1-P	Field mustard	nucleus	8.22	19.0
CDY34153	Canola	nucleus	8.22	19.0
AT3G27350.2	Thale cress	cytosol, nucleus, plastid	8.99	18.18
Zm00001d005523_P001	Maize	cytosol, extracellular, plastid	5.74	17.87
PGSC0003DMT400004849	Potato	nucleus	12.25	17.56
EES06976	Sorghum	nucleus	12.87	15.75
PGSC0003DMT400058225	Potato	nucleus	14.26	15.44
CDY15926	Canola	plastid	5.89	15.32
PGSC0003DMT400078339	Potato	nucleus	15.66	14.81
Os02t0558600-01	Rice	nucleus	13.49	14.67
TraesCS2B01G104800.2	Wheat	nucleus	10.85	14.49
GSMUA_Achr6P24150_001	Banana	nucleus	10.08	14.35
GSMUA_Achr6P03270_001	Banana	nucleus	8.99	13.98
TraesCS6A01G159300.1	Wheat	nucleus	11.94	13.92
TraesCS2D01G087000.1	Wheat	nucleus	10.39	13.87
GSMUA_Achr7P23570_001	Banana	nucleus	11.47	13.86
GSMUA_Achr6P18450_001	Banana	nucleus	11.32	13.85
TraesCS6D01G153200.1	Wheat	nucleus	11.63	13.56
TraesCS6B01G192000.1	Wheat	nucleus	11.63	13.56
OQU79091	Sorghum	nucleus	8.68	13.56
TraesCS3B01G438400.1	Wheat	nucleus	11.78	13.31
EES03998	Sorghum	nucleus	11.32	12.87
HORVU6Hr1G033310.33	Barley	cytosol	11.78	12.69
TraesCS3D01G400000.1	Wheat	nucleus	11.16	12.61
Zm00001d016849_P002	Maize	nucleus	10.85	12.57
TraesCS3A01G404700.2	Wheat	nucleus	11.16	12.57
Zm00001d023630_P005	Maize	nucleus	8.99	12.45
Os01t0885300-01	Rice	nucleus	11.01	12.39
TraesCS2A01G089100.1	Wheat	nucleus	5.89	11.52
Os12t0273700-01	Rice	nucleus	6.98	11.22
Zm00001d042598_P003	Maize	mitochondrion	11.16	11.2
TraesCS1B01G273800.1	Wheat	nucleus	12.56	11.08
TraesCS1D01G263300.1	Wheat	nucleus	12.4	10.94
TraesCS1A01G263200.1	Wheat	nucleus	12.25	10.82
HORVU1Hr1G063930.1	Barley	nucleus	11.78	10.41
Os05t0420500-01	Rice	nucleus	11.32	10.27
Zm00001d038217_P002	Maize	nucleus	11.32	9.68
EES18249	Sorghum	nucleus	10.7	9.0
HORVU2Hr1G014550.1	Barley	cytosol	4.96	5.83

Protein Annotations

EnsemblPlants:PGSC0003DMT400031254	EnsemblPlantsGene:PGSC0003DMG400011978	InterPro:TPX2_C	ncoils:Coil	PANTHER:PTHR31358	PANTHER:PTHR31358:SF12
PFAM:PF06886	PGSC:PGSC0003DMG400011978	SEG:seg	UniParc:UPI0002959D78	UniProt:M1AVE6	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011978]

Coordinates

chr5:-:11550166..11554326

Molecular Weight (calculated)

72137.6 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.956

Length

645 amino acids

Sequence
(BLAST)

001: MDESSSSSAC LVRSFSQPSQ ERTEGDPLLR ALSTSVSFGR FMSESLDWEK WSSFTHNRYL EEVGKYAKPG SVAEKKAYFE AQHKKAAAKK AALLLEQQNA
101: AVDESSDLNV TNQNNDHSTV ITEPSSCVGI EETQIEEGEL NVTAQIIDIE SELTENGSYE GTEEALGDQD HLNVTNPSVD NCTMLFQLPE NSSHMGIEEV
201: QGNEGDNTTT CGSYPIHEEI NLETTGIENS IEQSYPVENE LKSLNQPENV VVEVSENVAQ LKEKKQTKNA AMVGDTVLSM KKKPKKPLTL KTRLTTKNES
301: SKFKSQVKPV TALQPIVTDK SAPTSRNNGK VMTDKKKSNP KSRQMSIKFF SHREETKKPM SPILEKIVNS RFVRSITKTS RDSKIQQTST LASVSGISKC
401: PSEAPQRANK RDRTKLDHQS LCRSRKEEGE SVSQSRNLKS INKHGNVACS SPTVFSPFSL RSEERAAKRR EFFQKLEQKL NTKEAEEEQQ QAKPKANTTS
501: SSKVLISRDK PNPRIHHGRE SSSNQMKKGK ATSSSKVLIS GAKPDPSIHQ ERESYSYQMK MEKTTSSSKV LTARAKPNTS IHQERELSSN QMKKRAKPNT
601: SIHQERELSS NQMKKRAKPN TSIHQERELS SNQMKKVLFS FPLTS

Best Arabidopsis Sequence Match ( AT3G26050.1 )
(BLAST)

001: MGESICLVRS FSQPSEFSSR EINEVVPNRV LTESVSFGRY ANETLAWARW SAFTQNRYLE EVERFTKPGS VAEKKAFFEA HFKNRASGKA ATQTKKIEQV
101: KVKDSVEIVC DIPKDILVDS EVPLAVNREV SSNEVDSVVP SISVIDETGK VENLKSVVVP DEGNSTSLSK ERPPSSSGSK VSSSKLESSV VIELDHSLKN
201: TKKESSSSST RSLSASKNRS RSPPEPIHMS ISCVSSSNTE KTIVGRPQNG SRSAVKADKK KRSGPSSVHM SLNFASSTLR TTKEAPKTLA RNSTTQGTTS
301: TNARNKLFPK INEPTGALKS CKRPLSQTSK DGSTNASAVT LPRLPLLSNL LSENKRKNIS VRSSVSCRIS NNEQRKPSVG CENLSTHSRT KAKSLTVSSP
401: FVFRSDERAE KRKEFFKKVE EKNKKEKEDK FSCGFKANQN TNLASEEHKN PQVGGFQVTP MTLTSPRFRR NQTPGKENIK KPHQTPHKAS SMKIINTKKV
501: VMEKHKSSKI HPSSKQQTTK RTQENMSPNI LQN

Arabidopsis Description

TPX2 (Targeting protein for Xklp2) protein family [Source:UniProtKB/TrEMBL;Acc:Q84JG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.