Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36374 | Canola | nucleus | 87.8 | 77.08 |
| Bra028471.1-P | Field mustard | nucleus | 51.53 | 49.84 |
| Bra025270.1-P | Field mustard | nucleus | 32.54 | 37.94 |
| AT5G40700.2 | Thale cress | nucleus, plastid | 36.95 | 35.97 |
| Bra033005.1-P | Field mustard | nucleus | 30.85 | 32.62 |
| Bra015186.1-P | Field mustard | nucleus | 24.07 | 23.2 |
| Bra000994.1-P | Field mustard | nucleus | 24.75 | 20.68 |
| Bra016318.1-P | Field mustard | nucleus | 24.07 | 14.55 |
| Bra016172.1-P | Field mustard | nucleus | 19.66 | 12.06 |
| Bra024641.1-P | Field mustard | nucleus | 20.0 | 11.68 |
| Bra016236.1-P | Field mustard | nucleus | 17.63 | 10.79 |
| PGSC0003DMT400031254 | Potato | nucleus | 21.69 | 9.92 |
| Solyc05g014270.2.1 | Tomato | nucleus | 20.68 | 9.16 |
| Bra012357.1-P | Field mustard | nucleus | 8.81 | 7.95 |
| Bra036350.1-P | Field mustard | nucleus | 13.56 | 7.18 |
Protein Annotations
Description
AT5G40700 (E=1e-053) | unknown protein
Coordinates
chrA04:-:7925552..7926976
Molecular Weight (calculated)
33336.9 Da
IEP (calculated)
5.037
GRAVY (calculated)
-0.872
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESAVLFHS YSFGAPPLSR NETHQDNTKH ALSQSVSFGR FTTENLEWGK WSSFSHKKYV DEAEKYSQPG SVAQKKAFFD AHYKKIAESK KAKTSLDESK
101: QQQQQPESVA VLLNTLETLT KDEAKEEESG ETELVSEEPE TKCVVVVLEQ EDVVVGSSLA EPVTEDDLQA VVEVLDEREE DEELLKKSSS VEEKEEERKF
201: VTNKSSVFPS ETPDKAMELV VTQKLSEDSI KKNEKSVRPR FSFLKLLMGS STKAQRQNSK KKTDKKPNKP FLCLCFNPEM VGETEGPTKT QRRNL
101: QQQQQPESVA VLLNTLETLT KDEAKEEESG ETELVSEEPE TKCVVVVLEQ EDVVVGSSLA EPVTEDDLQA VVEVLDEREE DEELLKKSSS VEEKEEERKF
201: VTNKSSVFPS ETPDKAMELV VTQKLSEDSI KKNEKSVRPR FSFLKLLMGS STKAQRQNSK KKTDKKPNKP FLCLCFNPEM VGETEGPTKT QRRNL
001: MAESAVLFHS YSFAAPPSRN ESHEDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKFSQPGS VAQKKAFFEA HYKKIAEAKK AKASDQSSDS
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLSCL MGNTKTQDQK LTIKKRKTSK KPFLCLCFKP EMAGETEAGR
301: QR
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLSCL MGNTKTQDQK LTIKKRKTSK KPFLCLCFKP EMAGETEAGR
301: QR
Arabidopsis Description
At5g40700 [Source:UniProtKB/TrEMBL;Acc:Q5PP69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.