Factsheet for Bra015186.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33408	Canola	nucleus	76.47	62.9
Bra000994.1-P	Field mustard	nucleus	50.65	43.91
AT3G01710.3	Thale cress	nucleus	38.89	29.02
Bra033005.1-P	Field mustard	nucleus	23.2	25.45
Bra025270.1-P	Field mustard	nucleus	19.93	24.11
Bra025552.1-P	Field mustard	nucleus	23.2	24.07
Bra028471.1-P	Field mustard	nucleus	21.9	21.97
PGSC0003DMT400017939	Potato	nucleus	31.37	19.35
Solyc02g067950.2.1	Tomato	extracellular	30.72	18.95
Solyc02g093720.2.1	Tomato	nucleus	29.41	17.96
KRH07049	Soybean	nucleus	29.09	17.84
PGSC0003DMT400032926	Potato	nucleus	29.09	17.42
VIT_14s0219g00090.t01	Wine grape	nucleus	29.41	15.87
KRH57609	Soybean	nucleus	30.07	14.79
KRG94005	Soybean	nucleus	27.12	12.61
Bra016172.1-P	Field mustard	nucleus	19.28	12.27
Bra016236.1-P	Field mustard	nucleus	19.28	12.24
Bra024641.1-P	Field mustard	nucleus	18.95	11.49
Bra016318.1-P	Field mustard	nucleus	17.97	11.27
Bra036350.1-P	Field mustard	nucleus	18.95	10.41
Bra012357.1-P	Field mustard	nucleus	7.52	7.03

Protein Annotations

EnsemblPlants:Bra015186.1	EnsemblPlants:Bra015186.1-P	EnsemblPlantsGene:Bra015186	PANTHER:PTHR31358	PANTHER:PTHR31358:SF12	SEG:seg
UniParc:UPI0002541221	UniProt:M4DFB4	MapMan:35.2	:	:	:

Description

AT3G01710 (E=9e-086) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 1478 Blast hits to 1129 proteins in 153 species: Archae - 0; Bacteria - 54; Metazoa - 662; Fungi - 96; Plants - 192; Viruses - 10; Other Eukaryotes - 464 (source: NCBI BLink).

Coordinates

chrA07:+:2522823..2524261

Molecular Weight (calculated)

34131.2 Da

IEP (calculated)

10.225

GRAVY (calculated)

-0.879

Length

306 amino acids

Sequence
(BLAST)

001: MGESACLMQP FSYAAPQGDS LGALGQSVSF GRFMSEKIDW EKWSSFPTQN RYVAETERYS RPGSVAQKKA FFEAHYKKLA AARKAAPEEA LLLRQLTSDE
101: LVPVQEDING VGKKESDPVL EIPRASLDAE MKVVAEKVSM SGNRQSDEKE NRGKDKSEIN GKGSTVKEEQ QLFAEEEIQI KEAQPKSSTK PRVSKLNISE
201: RTPSQKPSSN KSSSYNFTPA KEFNRLVSMI RKIDGSTRAS SSSKLQTKEC KTPLRTPSSN NKVSAKGIVE DSLFTTPLSS NRRTPSYFTP FGLRTEERAE
301: RRKKAR

Best Arabidopsis Sequence Match ( AT3G01710.2 )
(BLAST)

001: MGESACLMQP FSYAAPQGDS LGALGQSVSF GRFMSEKLDW EKWSAFSTQN PYVAEAERYS KPGSVAQKKA FFEAHYKKVA AARKAAAEEA LLLQQQIPKP
101: QPEKSPVQEE DINEGEKKDW MVSKPDLEIP RGSLDVSAQL KLLAEKEGRF SNRQSDEKEN CGMAESEING RTAEEQVDEE KPILKSVKKK SKDSQPKSST
201: KPRVSKYNSS ERTPSKKSNN KSSSYTFTPA KEFNRLVSII RKIDGSRASS KPTKDCKTPL RTPSNKVSAK GMVEDSLSTP LSSNTRGKIA PNSSAKTGRG
301: RWNFLPAETP SCFTPFGLRT EERAERRKKK LEGKFKEMET QNQKAEERSV EKEESKLRQR LCFKAKPLPN FYKQRPKSTD QTKKALLQ

Arabidopsis Description

TPX2 (Targeting protein for Xklp2) protein family [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.