Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g093720.2.1 | Tomato | nucleus | 80.82 | 82.44 |
| PGSC0003DMT400017939 | Potato | nucleus | 46.58 | 47.98 |
| VIT_14s0219g00090.t01 | Wine grape | nucleus | 36.4 | 32.8 |
| AT3G01710.3 | Thale cress | nucleus | 25.44 | 31.71 |
| Zm00001d024922_P001 | Maize | nucleus | 6.26 | 31.37 |
| CDX91933 | Canola | nucleus | 19.37 | 30.56 |
| KRH07049 | Soybean | nucleus | 29.55 | 30.26 |
| Bra000994.1-P | Field mustard | nucleus | 20.74 | 30.03 |
| Bra015186.1-P | Field mustard | nucleus | 17.42 | 29.09 |
| CDY33408 | Canola | nucleus | 20.94 | 28.76 |
| CDY32377 | Canola | nucleus | 16.24 | 28.14 |
| KRH57609 | Soybean | nucleus | 34.25 | 28.14 |
| CDX74313 | Canola | nucleus | 21.92 | 28.0 |
| KRG94005 | Soybean | nucleus | 31.31 | 24.32 |
| PGSC0003DMT400031254 | Potato | nucleus | 23.87 | 18.91 |
| HORVU2Hr1G014490.1 | Barley | plastid | 6.65 | 18.58 |
| TraesCS2D01G087000.1 | Wheat | nucleus | 14.68 | 15.53 |
| Zm00001d005523_P001 | Maize | cytosol, extracellular, plastid | 6.26 | 15.46 |
| TraesCS2B01G104800.2 | Wheat | nucleus | 14.29 | 15.11 |
| GSMUA_Achr6P24150_001 | Banana | nucleus | 13.11 | 14.79 |
| Os12t0273700-01 | Rice | nucleus | 11.35 | 14.46 |
| PGSC0003DMT400004849 | Potato | nucleus | 12.52 | 14.22 |
| GSMUA_Achr7P23570_001 | Banana | nucleus | 14.68 | 14.04 |
| GSMUA_Achr6P18450_001 | Banana | nucleus | 14.48 | 14.04 |
| Os01t0885300-01 | Rice | nucleus | 15.66 | 13.96 |
| TraesCS6D01G153200.1 | Wheat | nucleus | 15.07 | 13.92 |
| TraesCS6A01G159300.1 | Wheat | nucleus | 15.07 | 13.92 |
| TraesCS6B01G192000.1 | Wheat | nucleus | 14.87 | 13.74 |
| GSMUA_Achr6P03270_001 | Banana | nucleus | 11.15 | 13.73 |
| EES06976 | Sorghum | nucleus | 14.09 | 13.66 |
| TraesCS2A01G089100.1 | Wheat | nucleus | 8.81 | 13.64 |
| TraesCS3A01G404700.2 | Wheat | nucleus | 15.26 | 13.61 |
| EES03998 | Sorghum | nucleus | 15.07 | 13.58 |
| Zm00001d023630_P005 | Maize | nucleus | 12.13 | 13.3 |
| TraesCS3B01G438400.1 | Wheat | nucleus | 14.68 | 13.13 |
| PGSC0003DMT400058225 | Potato | nucleus | 15.07 | 12.92 |
| TraesCS3D01G400000.1 | Wheat | nucleus | 14.29 | 12.78 |
| Zm00001d016849_P002 | Maize | nucleus | 13.89 | 12.75 |
| OQU79091 | Sorghum | nucleus | 9.98 | 12.35 |
| Zm00001d042598_P003 | Maize | mitochondrion | 14.87 | 11.82 |
| PGSC0003DMT400078339 | Potato | nucleus | 15.66 | 11.73 |
| Os02t0558600-01 | Rice | nucleus | 13.5 | 11.64 |
| HORVU6Hr1G033310.33 | Barley | cytosol | 13.31 | 11.35 |
| TraesCS1A01G263200.1 | Wheat | nucleus | 15.66 | 10.96 |
| HORVU1Hr1G063930.1 | Barley | nucleus | 15.46 | 10.82 |
| TraesCS1D01G263300.1 | Wheat | nucleus | 15.46 | 10.81 |
| Zm00001d038217_P002 | Maize | nucleus | 15.85 | 10.74 |
| Os05t0420500-01 | Rice | nucleus | 14.87 | 10.69 |
| TraesCS1B01G273800.1 | Wheat | nucleus | 15.26 | 10.67 |
| EES18249 | Sorghum | nucleus | 15.85 | 10.56 |
| HORVU2Hr1G014550.1 | Barley | cytosol | 6.65 | 6.19 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400032926 | EnsemblPlantsGene:PGSC0003DMG400012646 | InterPro:TPX2_C | ncoils:Coil | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF12 |
| PFAM:PF06886 | PGSC:PGSC0003DMG400012646 | SEG:seg | UniParc:UPI0002952084 | UniProt:M1AYB5 | MapMan:20.1.5.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012646]
Coordinates
chr2:-:47660885..47664620
Molecular Weight (calculated)
56404.1 Da
IEP (calculated)
10.138
GRAVY (calculated)
-0.881
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSACLIHA FSYASAIPNE IKQGNPVHAL GESISFGRFV SESLDWEKWS TFSHKRYVEE AERYAKPGSV AQKKAFFEAH YKKIAAQKAA ALLEQANQEN
101: PNSEITKNSA PDSTSLVKPR VEANQEEVHE NPDAVTTDSM VKDSVSVADA EEIESESPVE GPGTPEATEK EPSNQIENGE TQETVSGSEI SETSHTEKPL
201: LKIKSSSSKL EDDPASVTSK KKSAFSSFKS AVYSKKSKFP FSPSRHNILL DVDKENNFTP ITTNSNLDLM NEVRSTPKSL NKLINFTPAK EAHKIPPPPP
301: FLKKESSKVA PTTSKAASKQ CATPLKTPMA TSNGASNRPM TTPSSESRRI KTPIHPSASG SRTAGPKWNI LSSVSKSFTA YRNKLQSPTL STPFSLRTEE
401: RATRRKQKLE EKFNANEEKK VQQQTTLKEK AGTELRRLRQ SFCFKARPLP DFYKETETAK DHAKKIPVTQ TQLPKRGRMP FPSSKQGLVS KPASSSLAKN
501: DSCKNPRKKT S
101: PNSEITKNSA PDSTSLVKPR VEANQEEVHE NPDAVTTDSM VKDSVSVADA EEIESESPVE GPGTPEATEK EPSNQIENGE TQETVSGSEI SETSHTEKPL
201: LKIKSSSSKL EDDPASVTSK KKSAFSSFKS AVYSKKSKFP FSPSRHNILL DVDKENNFTP ITTNSNLDLM NEVRSTPKSL NKLINFTPAK EAHKIPPPPP
301: FLKKESSKVA PTTSKAASKQ CATPLKTPMA TSNGASNRPM TTPSSESRRI KTPIHPSASG SRTAGPKWNI LSSVSKSFTA YRNKLQSPTL STPFSLRTEE
401: RATRRKQKLE EKFNANEEKK VQQQTTLKEK AGTELRRLRQ SFCFKARPLP DFYKETETAK DHAKKIPVTQ TQLPKRGRMP FPSSKQGLVS KPASSSLAKN
501: DSCKNPRKKT S
001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE
Arabidopsis Description
Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.