Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G192000.1 | Wheat | nucleus | 96.75 | 96.75 |
| TraesCS6D01G153200.1 | Wheat | nucleus | 96.02 | 96.02 |
| HORVU6Hr1G033310.33 | Barley | cytosol | 78.84 | 72.79 |
| Os02t0558600-01 | Rice | nucleus | 47.74 | 44.52 |
| Zm00001d024922_P001 | Maize | nucleus | 7.59 | 41.18 |
| Zm00001d016849_P002 | Maize | nucleus | 40.14 | 39.86 |
| EES06976 | Sorghum | nucleus | 37.97 | 39.85 |
| GSMUA_Achr6P24150_001 | Banana | nucleus | 18.26 | 22.3 |
| Zm00001d005523_P001 | Maize | cytosol, extracellular, plastid | 6.87 | 18.36 |
| KRH33693 | Soybean | nucleus | 6.69 | 17.37 |
| TraesCS3A01G404700.2 | Wheat | nucleus | 16.82 | 16.23 |
| KRG99370 | Soybean | nucleus | 7.05 | 16.12 |
| VIT_18s0001g05830.t01 | Wine grape | nucleus | 14.83 | 15.71 |
| Solyc02g093720.2.1 | Tomato | nucleus | 14.1 | 15.57 |
| PGSC0003DMT400004849 | Potato | nucleus | 12.48 | 15.33 |
| PGSC0003DMT400017939 | Potato | nucleus | 13.74 | 15.32 |
| PGSC0003DMT400032926 | Potato | nucleus | 13.92 | 15.07 |
| KRH16191 | Soybean | nucleus | 9.95 | 14.86 |
| KRH69438 | Soybean | nucleus | 12.66 | 13.94 |
| Solyc02g067950.2.1 | Tomato | extracellular | 11.93 | 13.31 |
| KRG99221 | Soybean | nucleus | 11.39 | 13.21 |
| KRH45764 | Soybean | nucleus | 11.39 | 13.07 |
| KRH07049 | Soybean | nucleus | 11.39 | 12.63 |
| KRH57609 | Soybean | nucleus | 13.74 | 12.22 |
| Solyc05g006490.2.1 | Tomato | nucleus | 13.2 | 12.13 |
| PGSC0003DMT400058225 | Potato | nucleus | 13.02 | 12.08 |
| PGSC0003DMT400031254 | Potato | nucleus | 13.92 | 11.94 |
| TraesCS1A01G263200.1 | Wheat | nucleus | 15.37 | 11.64 |
| Solyc05g014270.2.1 | Tomato | nucleus | 13.2 | 10.96 |
| Solyc04g005060.2.1 | Tomato | nucleus | 7.23 | 10.7 |
| KRH74704 | Soybean | nucleus | 10.49 | 10.68 |
| KRG94005 | Soybean | nucleus | 12.66 | 10.64 |
| KRG97481 | Soybean | nucleus | 12.48 | 10.55 |
| TraesCS2A01G089100.1 | Wheat | nucleus | 5.97 | 10.0 |
| KRH31410 | Soybean | nucleus | 11.03 | 9.87 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G159300.1 | EnsemblPlantsGene:TraesCS6A01G159300 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF5 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6A:-:151465830..151470873
Molecular Weight (calculated)
60174.2 Da
IEP (calculated)
10.401
GRAVY (calculated)
-0.788
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEVGQPFS GWSYSDSPYN DLCTQDDSVQ KMVLDHGSVS FGRFAEESLS WENRSVFEHN RRQEEISKLT LPGLVAQKKA FFEEYYKRKA QKAKLLTEAT
101: LEERSDGDTL DHSRQEDDSH AVAPEDPVDS APGFSCQPST GVSSSDENKR SEPHGLGYLT FNPLFSRITG SQGIQDEEAS STAQNQHVDG EFRCATRTSS
201: KHGLNQETVE RKVLAPKHVV STDYGESNVA ASRIILPIAS LKAGVKKQEP RKSIAAAVIN GLTKGAKDPS SCLIQIPRVH LRRNSENMNS EGLKDPFHKR
301: VEMKLRALSD RMSAEKAAAS SRSSPYQNAD RAAISSRSAL CQNTDRVIAP SKSATQASHR FLKEVQPAAT LPRTNFYNKG SSVSHVASSN SSNTGKLATR
401: SSVMPNSPQN NAKPLQAAQV ASKRGAGLTS TSNGSQNKRK QLSTPAASVG NSRTRGSMHI CAPTSARSSS SGIRPYKTAK APRISNGRNA AVKTEMMQKS
501: TTYETHSVGG MNALSKVTVN GNEQNRKVIS SRDGKRSNLA CKSKPRQEMP RWR
101: LEERSDGDTL DHSRQEDDSH AVAPEDPVDS APGFSCQPST GVSSSDENKR SEPHGLGYLT FNPLFSRITG SQGIQDEEAS STAQNQHVDG EFRCATRTSS
201: KHGLNQETVE RKVLAPKHVV STDYGESNVA ASRIILPIAS LKAGVKKQEP RKSIAAAVIN GLTKGAKDPS SCLIQIPRVH LRRNSENMNS EGLKDPFHKR
301: VEMKLRALSD RMSAEKAAAS SRSSPYQNAD RAAISSRSAL CQNTDRVIAP SKSATQASHR FLKEVQPAAT LPRTNFYNKG SSVSHVASSN SSNTGKLATR
401: SSVMPNSPQN NAKPLQAAQV ASKRGAGLTS TSNGSQNKRK QLSTPAASVG NSRTRGSMHI CAPTSARSSS SGIRPYKTAK APRISNGRNA AVKTEMMQKS
501: TTYETHSVGG MNALSKVTVN GNEQNRKVIS SRDGKRSNLA CKSKPRQEMP RWR
001: MAGEVQDPFN LSLLENSIHS GSVSFGRFEK ESLSWERRSS FSRNIYLEEA ERFSKPGSVT QMRAHFEAHF KKKGIRFPSS VESQTWGEVV HHQTCTEKDE
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL
Arabidopsis Description
MDP40 [Source:UniProtKB/TrEMBL;Acc:A0A178W2Z1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.