Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024922_P001 | Maize | nucleus | 8.62 | 44.12 |
| Zm00001d005523_P001 | Maize | cytosol, extracellular, plastid | 8.81 | 22.22 |
| VIT_01s0010g02240.t01 | Wine grape | nucleus | 13.98 | 19.78 |
| EES06976 | Sorghum | nucleus | 18.97 | 18.79 |
| Zm00001d016849_P002 | Maize | nucleus | 18.58 | 17.41 |
| Os01t0885300-01 | Rice | nucleus | 18.58 | 16.93 |
| GSMUA_Achr6P24150_001 | Banana | nucleus | 14.37 | 16.56 |
| TraesCS3A01G404700.2 | Wheat | nucleus | 18.01 | 16.4 |
| TraesCS3B01G438400.1 | Wheat | nucleus | 17.24 | 15.76 |
| GSMUA_Achr6P18450_001 | Banana | nucleus | 15.9 | 15.75 |
| GSMUA_Achr7P23570_001 | Banana | nucleus | 15.9 | 15.54 |
| TraesCS6D01G153200.1 | Wheat | nucleus | 15.9 | 15.01 |
| Os02t0558600-01 | Rice | nucleus | 16.86 | 14.84 |
| TraesCS6A01G159300.1 | Wheat | nucleus | 15.71 | 14.83 |
| TraesCS3D01G400000.1 | Wheat | nucleus | 16.09 | 14.71 |
| TraesCS6B01G192000.1 | Wheat | nucleus | 15.52 | 14.65 |
| EES03998 | Sorghum | nucleus | 15.52 | 14.29 |
| VIT_14s0219g00090.t01 | Wine grape | nucleus | 15.33 | 14.11 |
| Zm00001d042598_P003 | Maize | mitochondrion | 16.67 | 13.53 |
| VIT_01s0026g00960.t01 | Wine grape | nucleus | 12.64 | 12.87 |
| HORVU6Hr1G033310.33 | Barley | cytosol | 14.37 | 12.52 |
| HORVU1Hr1G063930.1 | Barley | nucleus | 16.48 | 11.78 |
| Os05t0420500-01 | Rice | nucleus | 15.9 | 11.67 |
| TraesCS1D01G263300.1 | Wheat | nucleus | 16.28 | 11.63 |
| TraesCS1A01G263200.1 | Wheat | nucleus | 16.09 | 11.51 |
| VIT_01s0011g04850.t01 | Wine grape | nucleus | 13.03 | 11.47 |
| TraesCS1B01G273800.1 | Wheat | nucleus | 15.9 | 11.35 |
| Zm00001d038217_P002 | Maize | nucleus | 15.33 | 10.61 |
| EES18249 | Sorghum | nucleus | 15.52 | 10.56 |
| VIT_07s0005g05560.t01 | Wine grape | mitochondrion, plastid | 1.53 | 9.41 |
Protein Annotations
| ArrayExpress:VIT_18s0001g05830 | EMBL:FN595996 | EnsemblPlants:VIT_18s0001g05830.t01 | EnsemblPlantsGene:VIT_18s0001g05830 | EntrezGene:100263636 | EntrezGene:LOC100263636 |
| ncoils:Coil | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF5 | ProteinID:CCB56087 | ProteinID:CCB56087.1 | RefSeq:XP_002275828 |
| RefSeq:XP_002275828.2 | SEG:seg | unigene:Vvi.3261 | UniParc:UPI0002109111 | UniProt:F6HN32 | wikigene:100263636 |
| wikigene:LOC100263636 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr18_random:-:4510480..4516064
Molecular Weight (calculated)
57507.1 Da
IEP (calculated)
9.970
GRAVY (calculated)
-0.968
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MATYTDHHQA YCDNWGCSDL PSEHEDPQGI SISEILNHGS ISFGRYAAEP LAWEKWSVFS HNRCQEELEK FKAPGLVAQK KAYFEEYYRR IRALKAAEAE
101: AQKQETTHHP EPYQDDLTAT TSAEDSINDT GSKEEEQTSV VTQIQFSDTE TTFPNLSGDS IENKSEVAEQ QRSYSSSSNG EASVGYKADV SYSALDLAHS
201: PEVASPEPVP QSDSSSEAAQ QNGLVSDMGT VNLSSSKRED HAPVLKPKGT MASARNRAKL DCRTRNNVQK LSEKLKPSSQ KKVAGNAGGK LQASRKTTPK
301: PAGNMRPNSV SSHRPPPTKV PTGATVLHSS IARDKPVPSP STIRSVQTMI SLNPKVLPEK LTSRLPVNTL SRSAVQSTPK EITIKDGMRN VATENRSVRG
401: GVARKSLDLT GCNMTPKGGQ SEKLRPKAMS TTLPARNKSN QNRGIEFLHR SYDRGHQKEG KDQTNAGQRR YPKPALSSAP SIHKPPSPRP RKITPLQSAE
501: LMRNQREPRE PREPRPKTPC WR
101: AQKQETTHHP EPYQDDLTAT TSAEDSINDT GSKEEEQTSV VTQIQFSDTE TTFPNLSGDS IENKSEVAEQ QRSYSSSSNG EASVGYKADV SYSALDLAHS
201: PEVASPEPVP QSDSSSEAAQ QNGLVSDMGT VNLSSSKRED HAPVLKPKGT MASARNRAKL DCRTRNNVQK LSEKLKPSSQ KKVAGNAGGK LQASRKTTPK
301: PAGNMRPNSV SSHRPPPTKV PTGATVLHSS IARDKPVPSP STIRSVQTMI SLNPKVLPEK LTSRLPVNTL SRSAVQSTPK EITIKDGMRN VATENRSVRG
401: GVARKSLDLT GCNMTPKGGQ SEKLRPKAMS TTLPARNKSN QNRGIEFLHR SYDRGHQKEG KDQTNAGQRR YPKPALSSAP SIHKPPSPRP RKITPLQSAE
501: LMRNQREPRE PREPRPKTPC WR
001: MGESICLVRS FSQPSEFSSR EINEVVPNRV LTESVSFGRY ANETLAWARW SAFTQNRYLE EVERFTKPGS VAEKKAFFEA HFKNRASGKA ATQTKKIEQV
101: KVKDSVEIVC DIPKDILVDS EVPLAVNREV SSNEVDSVVP SISVIDETGK VENLKSVVVP DEGNSTSLSK ERPPSSSGSK VSSSKLESSV VIELDHSLKN
201: TKKESSSSST RSLSASKNRS RSPPEPIHMS ISCVSSSNTE KTIVGRPQNG SRSAVKADKK KRSGPSSVHM SLNFASSTLR TTKEAPKTLA RNSTTQGTTS
301: TNARNKLFPK INEPTGALKS CKRPLSQTSK DGSTNASAVT LPRLPLLSNL LSENKRKNIS VRSSVSCRIS NNEQRKPSVG CENLSTHSRT KAKSLTVSSP
401: FVFRSDERAE KRKEFFKKVE EKNKKEKEDK FSCGFKANQN TNLASEEHKN PQVGGFQVTP MTLTSPRFRR NQTPGKENIK KPHQTPHKAS SMKIINTKKV
501: VMEKHKSSKI HPSSKQQTTK RTQENMSPNI LQN
101: KVKDSVEIVC DIPKDILVDS EVPLAVNREV SSNEVDSVVP SISVIDETGK VENLKSVVVP DEGNSTSLSK ERPPSSSGSK VSSSKLESSV VIELDHSLKN
201: TKKESSSSST RSLSASKNRS RSPPEPIHMS ISCVSSSNTE KTIVGRPQNG SRSAVKADKK KRSGPSSVHM SLNFASSTLR TTKEAPKTLA RNSTTQGTTS
301: TNARNKLFPK INEPTGALKS CKRPLSQTSK DGSTNASAVT LPRLPLLSNL LSENKRKNIS VRSSVSCRIS NNEQRKPSVG CENLSTHSRT KAKSLTVSSP
401: FVFRSDERAE KRKEFFKKVE EKNKKEKEDK FSCGFKANQN TNLASEEHKN PQVGGFQVTP MTLTSPRFRR NQTPGKENIK KPHQTPHKAS SMKIINTKKV
501: VMEKHKSSKI HPSSKQQTTK RTQENMSPNI LQN
Arabidopsis Description
TPX2 (Targeting protein for Xklp2) protein family [Source:UniProtKB/TrEMBL;Acc:Q84JG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.