Factsheet for Bra028471.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67471	Canola	nucleus	100.0	100.0
Bra025552.1-P	Field mustard	nucleus	49.84	51.53
Bra025270.1-P	Field mustard	nucleus	30.82	37.15
AT5G40700.2	Thale cress	nucleus, plastid	36.72	36.96
Bra033005.1-P	Field mustard	nucleus	33.11	36.2
Bra015186.1-P	Field mustard	nucleus	21.97	21.9
Bra000994.1-P	Field mustard	nucleus	22.95	19.83
Bra016318.1-P	Field mustard	nucleus	20.33	12.7
Bra024641.1-P	Field mustard	nucleus	20.98	12.67
Bra016236.1-P	Field mustard	nucleus	18.36	11.62
Bra016172.1-P	Field mustard	nucleus	17.7	11.23
PGSC0003DMT400031254	Potato	nucleus	21.64	10.23
Solyc05g014270.2.1	Tomato	nucleus	18.03	8.26
Bra036350.1-P	Field mustard	nucleus	14.75	8.08
Bra012357.1-P	Field mustard	nucleus	6.89	6.42

Protein Annotations

EnsemblPlants:Bra028471.1	EnsemblPlants:Bra028471.1-P	EnsemblPlantsGene:Bra028471	PANTHER:PTHR31358	PANTHER:PTHR31358:SF12	SEG:seg
UniParc:UPI0002543323	UniProt:M4EI56	MapMan:35.2	:	:	:

Description

AT5G40700 (E=1e-070) | unknown protein

Coordinates

chrA02:-:531107..532460

Molecular Weight (calculated)

34351.4 Da

IEP (calculated)

5.242

GRAVY (calculated)

-0.797

Length

305 amino acids

Sequence
(BLAST)

001: MGESAVLFHS HSFAAPLSRH ETHQDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKYSQPGS VAQKKAFFDA HYKKIAEAKK AKAASDDSKQ
101: EEQQPESVAV LLNTLETLTK DEVKEEEESG ETELVLGGEE AVLSIEKDEE EPERTSVVVV LEQEDTVVDN SVIADDLKAL LEVLDENHIE DAELLKKSSS
201: VGEKEEERKS VTKISPVSMD KSEAPKKAME LVVSQKISEK PATHSSMKKN KFSFLKLLMG NTKTQDQNPK RKTDKKPNKM FLCLCFNPEM VRETEGPTKT
301: QRKNL

Best Arabidopsis Sequence Match ( AT5G40700.1 )
(BLAST)

001: MAESAVLFHS YSFAAPPSRN ESHEDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKFSQPGS VAQKKAFFEA HYKKIAEAKK AKASDQSSDS
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLSCL MGNTKTQDQK LTIKKRKTSK KPFLCLCFKP EMAGETEAGR
301: QR

Arabidopsis Description

At5g40700 [Source:UniProtKB/TrEMBL;Acc:Q5PP69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.