Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025270.1-P | Field mustard | nucleus | 89.96 | 88.54 |
| CDY13707 | Canola | nucleus | 69.88 | 68.5 |
| CDX99631 | Canola | cytosol | 28.51 | 48.97 |
| CDY34153 | Canola | nucleus | 48.59 | 43.37 |
| CDY48358 | Canola | nucleus | 48.19 | 43.01 |
| AT3G27350.2 | Thale cress | cytosol, nucleus, plastid | 50.2 | 39.19 |
| CDY42558 | Canola | nucleus | 37.35 | 31.74 |
| CDY11706 | Canola | nucleus | 38.55 | 31.48 |
| CDX67471 | Canola | nucleus | 37.35 | 30.49 |
| CDY36374 | Canola | nucleus | 39.76 | 29.46 |
| CDY46410 | Canola | cytosol | 18.47 | 28.22 |
| CDY32377 | Canola | nucleus | 25.3 | 21.36 |
| CDX91933 | Canola | nucleus | 26.91 | 20.68 |
| CDY38789 | Canola | nucleus | 24.5 | 20.47 |
| CDY15926 | Canola | plastid | 18.88 | 18.95 |
| CDX74313 | Canola | nucleus | 27.31 | 17.0 |
| CDY33408 | Canola | nucleus | 23.29 | 15.59 |
| CDY11620 | Canola | nucleus | 24.5 | 12.45 |
| CDY14672 | Canola | nucleus | 24.5 | 12.3 |
| CDY25766 | Canola | nucleus | 18.07 | 12.13 |
| CDY16238 | Canola | nucleus | 24.1 | 11.86 |
| CDX96289 | Canola | nucleus | 22.49 | 11.55 |
| CDX72762 | Canola | nucleus | 20.88 | 11.45 |
| CDX99732 | Canola | nucleus | 19.28 | 8.99 |
| CDY38790 | Canola | nucleus | 4.82 | 8.63 |
| Solyc05g014270.2.1 | Tomato | nucleus | 22.89 | 8.56 |
| PGSC0003DMT400031254 | Potato | nucleus | 21.69 | 8.37 |
| CDY40987 | Canola | nucleus | 19.28 | 8.35 |
| CDY46409 | Canola | nucleus | 8.43 | 7.98 |
| CDY12493 | Canola | nucleus | 9.64 | 7.67 |
Protein Annotations
| EnsemblPlants:CDX83685 | EnsemblPlantsGene:GSBRNA2T00139390001 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF12 | ProteinID:CDX83685 | ProteinID:CDX83685.1 |
| SEG:seg | UniParc:UPI0004EE3A32 | MapMan:35.2 | : | : | : |
Description
BnaC07g24250D
Coordinates
chrLK031833:+:1610536..1612429
Molecular Weight (calculated)
28417.9 Da
IEP (calculated)
8.948
GRAVY (calculated)
-0.811
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESAVLAHS CSFAAPITRS DSHEDNTIHA LSQSISFGKF MSENLEWGKW STFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPTVT
101: PAEVLLHTLE TQPPLSLLPE EELLERNKEE VLVVVDRPLE EKKKKQKDEE EDCSVGEKEK VKTKNKPVFR LSLEKTIPPA KPIEIASSDK TSERPMMIQS
201: SGVQRQKFSF LNCFIGNAKT RDQNQNMRKT EKKKQFMCLC LKPKNVRES
101: PAEVLLHTLE TQPPLSLLPE EELLERNKEE VLVVVDRPLE EKKKKQKDEE EDCSVGEKEK VKTKNKPVFR LSLEKTIPPA KPIEIASSDK TSERPMMIQS
201: SGVQRQKFSF LNCFIGNAKT RDQNQNMRKT EKKKQFMCLC LKPKNVRES
001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE
Arabidopsis Description
Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.