Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25766 | Canola | nucleus | 36.74 | 31.0 |
| Bra012357.1-P | Field mustard | nucleus | 28.11 | 26.91 |
| AT1G23060.1 | Thale cress | nucleus | 25.88 | 22.07 |
| CDY34153 | Canola | nucleus | 10.86 | 12.19 |
| CDY48358 | Canola | nucleus | 10.54 | 11.83 |
| CDY13707 | Canola | nucleus | 9.58 | 11.81 |
| CDX99631 | Canola | cytosol | 5.11 | 11.03 |
| CDY38790 | Canola | nucleus | 4.79 | 10.79 |
| CDY32377 | Canola | nucleus | 9.27 | 9.83 |
| CDX83685 | Canola | nucleus | 7.67 | 9.64 |
| CDX91933 | Canola | nucleus | 8.95 | 8.64 |
| CDY11706 | Canola | nucleus | 8.31 | 8.52 |
| CDY33408 | Canola | nucleus | 9.9 | 8.33 |
| CDY42558 | Canola | nucleus | 7.67 | 8.19 |
| CDX67471 | Canola | nucleus | 7.67 | 7.87 |
| CDX74313 | Canola | nucleus | 9.9 | 7.75 |
| CDY36374 | Canola | nucleus | 8.31 | 7.74 |
| CDX99732 | Canola | nucleus | 13.1 | 7.68 |
| CDY14672 | Canola | nucleus | 12.14 | 7.66 |
| CDY40987 | Canola | nucleus | 14.06 | 7.65 |
| CDY11620 | Canola | nucleus | 11.82 | 7.55 |
| GSMUA_Achr6P03270_001 | Banana | nucleus | 9.9 | 7.47 |
| CDY38789 | Canola | nucleus | 7.03 | 7.38 |
| CDY46409 | Canola | nucleus | 6.07 | 7.22 |
| CDY16238 | Canola | nucleus | 11.18 | 6.92 |
| CDY15926 | Canola | plastid | 5.43 | 6.85 |
| CDY46410 | Canola | cytosol | 3.51 | 6.75 |
| CDX96289 | Canola | nucleus | 9.27 | 5.98 |
| CDX72762 | Canola | nucleus | 8.63 | 5.95 |
Protein Annotations
| EnsemblPlants:CDY12493 | EnsemblPlantsGene:GSBRNA2T00061809001 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF28 | ProteinID:CDY12493 | ProteinID:CDY12493.1 |
| SEG:seg | UniParc:UPI0004EDCD6D | UniProt:A0A078FK45 | MapMan:35.2 | : | : |
Description
BnaC07g13330DBnaC07g13330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK45]
Coordinates
chrLK032023:+:343035..344199
Molecular Weight (calculated)
34485.5 Da
IEP (calculated)
10.805
GRAVY (calculated)
-0.881
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAHFEAHFK KKGIQLPSSV EAQTWGEVAQ HHQQTASEKE GNLWEKKSSF GDSCVSYESY DDHSSLSVAP EKIGIGCSER SVEDKAEMSF PSATALKSLK
101: NDRKATPSYV KTTKTTTKKH VVIAKGSSSC NTKTSFDTKR GKEMKPALIV KSNASQAPVT KKTESLTPLA ANKFRSKNTF GSAMKERTAT NGFSSRSSER
201: VEKRKEENVE AIVLKSLNFK AIPVLRSRLA RPQHTSIGQE KVRKDAQAHS SKASSNRSSA NEAAKSKLNI NKQKVDTQRS LSEIRPNSRD QTAKNNANGR
301: SLAVRRSAVE VAW
101: NDRKATPSYV KTTKTTTKKH VVIAKGSSSC NTKTSFDTKR GKEMKPALIV KSNASQAPVT KKTESLTPLA ANKFRSKNTF GSAMKERTAT NGFSSRSSER
201: VEKRKEENVE AIVLKSLNFK AIPVLRSRLA RPQHTSIGQE KVRKDAQAHS SKASSNRSSA NEAAKSKLNI NKQKVDTQRS LSEIRPNSRD QTAKNNANGR
301: SLAVRRSAVE VAW
001: MRAHFEAHFK KKGIRFPSSV ESQTWGEVVH HQTCTEKDEN LWENTSQFGD SCVSFDETIL VNSDDDVHTS ISVALERTDI GRIEDEKETK SSSSATRSKP
101: LKNVQKARPY SATNKDSTKK HVVIPKGYSP SSNAKTSVDT KRQKELKPKR IVETVACQAP ATSKKTEILT PLLATREKKT STNGFSLRSN ERAEKKKEEK
201: VEAVVRKALN LKARPLPKST QARPQHTSTG QAKAKAKARD DHSSTASCDR SLTNRMAKSK VIINKQKADM QRSLNGIRPK TSDQTARNST NIRSLAVRRS
301: AVQVAL
101: LKNVQKARPY SATNKDSTKK HVVIPKGYSP SSNAKTSVDT KRQKELKPKR IVETVACQAP ATSKKTEILT PLLATREKKT STNGFSLRSN ERAEKKKEEK
201: VEAVVRKALN LKARPLPKST QARPQHTSTG QAKAKAKARD DHSSTASCDR SLTNRMAKSK VIINKQKADM QRSLNGIRPK TSDQTARNST NIRSLAVRRS
301: AVQVAL
Arabidopsis Description
MDP40 [Source:UniProtKB/TrEMBL;Acc:A0A178W2Z1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.