CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67471	Canola	nucleus	93.44	93.44
CDX99631	Canola	cytosol	28.2	59.31
CDY42558	Canola	nucleus	47.87	49.83
CDY13707	Canola	nucleus	34.75	41.73
CDY36374	Canola	nucleus	45.9	41.67
CDX83685	Canola	nucleus	31.48	38.55
AT5G40700.2	Thale cress	nucleus, plastid	36.72	36.96
CDY34153	Canola	nucleus	33.11	36.2
CDY48358	Canola	nucleus	32.46	35.48
CDY46410	Canola	cytosol	14.75	27.61
CDY15926	Canola	plastid	20.33	25.0
CDY32377	Canola	nucleus	22.62	23.39
CDX91933	Canola	nucleus	23.28	21.91
CDY38789	Canola	nucleus	18.69	19.13
CDY33408	Canola	nucleus	22.3	18.28
CDX74313	Canola	nucleus	23.28	17.75
CDY25766	Canola	nucleus	16.72	13.75
CDY16238	Canola	nucleus	20.66	12.45
CDY14672	Canola	nucleus	19.34	11.9
CDX96289	Canola	nucleus	18.69	11.75
CDY38790	Canola	nucleus	5.25	11.51
CDX72762	Canola	nucleus	16.72	11.23
CDY11620	Canola	nucleus	17.7	11.02
PGSC0003DMT400031254	Potato	nucleus	21.31	10.08
CDY40987	Canola	nucleus	16.39	8.7
CDX99732	Canola	nucleus	14.75	8.43
CDY12493	Canola	nucleus	8.52	8.31
Solyc05g014270.2.1	Tomato	nucleus	17.38	7.96
CDY46409	Canola	nucleus	5.9	6.84

Protein Annotations

EnsemblPlants:CDY11706	EnsemblPlantsGene:GSBRNA2T00049896001	PANTHER:PTHR31358	PANTHER:PTHR31358:SF12	ProteinID:CDY11706	ProteinID:CDY11706.1
SEG:seg	UniParc:UPI0004EE2FE0	UniProt:A0A078FEL6	MapMan:35.2	:	:

Description

BnaC06g13140DBnaC06g13140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEL6]

Coordinates

chrLK032013:-:612240..613708

Molecular Weight (calculated)

34332.4 Da

IEP (calculated)

5.240

GRAVY (calculated)

-0.810

Length

305 amino acids

Sequence
(BLAST)

001: MGESAVLFHS HSFAAPLSRH ESHQDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKYSQPGS VAQKKAFFDA HYKKIAEAKK AKAASDDSKQ
101: EEQQPESVAV LLNTLETLTK DEVKEEEEES GETELVLGGE EVVLSTEKDE KDPQRSVVVV LEQEDTVVDN SVIADDLKAI LEVLDENHIE DAELLKKSSS
201: VGEKEEERKS VTKISPVSMD KSEAPEKAME LVVSQKISEK PATHSSMKKN KFSFLKLLMG NTKTQDQNPK RKTDKKPNKM FLCLCLNPEM VRETEGPTKT
301: QRKNL

Best Arabidopsis Sequence Match ( AT5G40700.1 )
(BLAST)

001: MAESAVLFHS YSFAAPPSRN ESHEDNTMHA LSQSVSFGRF MTENLEWGKW SSFSHKKYVD EAEKFSQPGS VAQKKAFFEA HYKKIAEAKK AKASDQSSDS
101: DPKQEPESVA VLLNTLETLT KDEVKEEEGD ETELVLSSSE ELVLSIEKDD EPVRTNVAVL EQEDDLQVIH DDKEKDNHSE DGELVKKSCF VGEKEEERKS
201: VTKNSSVVRL SIEKSATSET PDKAMELVFS LKISGKPITH SSLTKSEKPV RPRFGFLSCL MGNTKTQDQK LTIKKRKTSK KPFLCLCFKP EMAGETEAGR
301: QR

Arabidopsis Description

At5g40700 [Source:UniProtKB/TrEMBL;Acc:Q5PP69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.