CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34153	Canola	nucleus	90.68	90.68
Bra033005.1-P	Field mustard	nucleus	90.32	90.32
CDY13707	Canola	nucleus	49.82	54.72
CDX99631	Canola	cytosol	25.09	48.28
CDX83685	Canola	nucleus	43.01	48.19
AT3G27350.2	Thale cress	cytosol, nucleus, plastid	50.54	44.2
CDX67471	Canola	nucleus	36.2	33.11
CDY11706	Canola	nucleus	35.48	32.46
CDY46410	Canola	cytosol	17.2	29.45
CDY42558	Canola	nucleus	30.11	28.67
CDY36374	Canola	nucleus	32.62	27.08
CDY32377	Canola	nucleus	25.81	24.41
CDX91933	Canola	nucleus	25.81	22.22
CDY38789	Canola	nucleus	20.43	19.13
CDY15926	Canola	plastid	16.13	18.15
CDX74313	Canola	nucleus	25.81	18.0
CDY33408	Canola	nucleus	23.66	17.74
CDY25766	Canola	nucleus	19.35	14.56
CDY11620	Canola	nucleus	22.58	12.86
CDY14672	Canola	nucleus	21.51	12.1
CDY16238	Canola	nucleus	20.43	11.26
CDX72762	Canola	nucleus	17.2	10.57
CDY12493	Canola	nucleus	11.83	10.54
CDX96289	Canola	nucleus	17.92	10.31
CDX99732	Canola	nucleus	19.35	10.11
CDY40987	Canola	nucleus	18.64	9.04
Solyc05g014270.2.1	Tomato	nucleus	21.51	9.01
PGSC0003DMT400031254	Potato	nucleus	19.71	8.53
CDY38790	Canola	nucleus	3.23	6.47
CDY46409	Canola	nucleus	5.38	5.7

Protein Annotations

EnsemblPlants:CDY48358	EnsemblPlantsGene:GSBRNA2T00089340001	PANTHER:PTHR31358	PANTHER:PTHR31358:SF12	ProteinID:CDY48358	ProteinID:CDY48358.1
SEG:seg	UniParc:UPI0004EDCD97	UniProt:A0A078IGS8	MapMan:35.2	:	:

Description

BnaCnng16200DBnaCnng16200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGS8]

Coordinates

chrLK032767:+:110270..112274

Molecular Weight (calculated)

32032.7 Da

IEP (calculated)

8.323

GRAVY (calculated)

-1.047

Length

279 amino acids

Sequence
(BLAST)

001: MGESAVLAHS YSFAAPITRT DSHEDHTNHA LSQSISFGKF MTENLEWGKW STFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPTVT
101: PAEVLLQALE TQPPPLSLLP EEESTTERKS IQNDDVLVGA VDDEMEEEKE NGLVDECDDK EQDEELLKEE KTRRSMTKNR PVFRLSLEKT IPPPKPIDTR
201: TEIATTPEKT SERPITQISG KTEEKPVHRK KFSFFNCFRG SAKTRDQNHS RKKGKRETKK QKKQFLCLCF KPKTVRRES

Best Arabidopsis Sequence Match ( AT3G27350.1 )
(BLAST)

001: MGESAVLVHS YSFAAPITRN DSHEENTIHA LSQSISFGKF MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT
101: PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI
201: PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIRE

Arabidopsis Description

Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.