Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14268 | Canola | nucleus | 89.91 | 91.88 |
| Bra010392.1-P | Field mustard | nucleus | 89.91 | 91.88 |
| CDX97399 | Canola | nucleus | 89.91 | 91.59 |
| CDY19018 | Canola | nucleus | 89.6 | 90.99 |
| CDX89221 | Canola | nucleus | 89.3 | 90.68 |
| Bra026301.1-P | Field mustard | nucleus | 89.3 | 90.68 |
| CDX92848 | Canola | nucleus | 84.4 | 90.49 |
| AT5G53360.1 | Thale cress | plasma membrane | 59.94 | 84.12 |
| VIT_02s0025g01660.t01 | Wine grape | cytosol | 79.82 | 82.59 |
| PGSC0003DMT400050427 | Potato | cytosol | 78.29 | 81.27 |
| PGSC0003DMT400023575 | Potato | cytosol | 77.98 | 81.21 |
| Solyc03g083270.2.1 | Tomato | cytosol | 77.68 | 81.15 |
| Solyc06g051980.2.1 | Tomato | cytosol | 77.68 | 80.63 |
| KRG97189 | Soybean | nucleus | 74.92 | 78.03 |
| GSMUA_Achr5P06970_001 | Banana | cytosol | 76.15 | 76.85 |
| AT3G61790.1 | Thale cress | nucleus | 76.45 | 76.69 |
| KRH68916 | Soybean | nucleus | 74.01 | 73.78 |
| AT2G41980.1 | Thale cress | nucleus | 65.14 | 69.84 |
| AT3G58040.3 | Thale cress | cytosol | 65.75 | 69.81 |
| VIT_15s0046g00400.t01 | Wine grape | cytosol | 45.87 | 55.56 |
| VIT_00s0426g00040.t01 | Wine grape | mitochondrion | 39.76 | 53.94 |
| VIT_15s0046g00390.t01 | Wine grape | nucleus | 42.81 | 52.04 |
| VIT_15s0046g00410.t01 | Wine grape | cytosol | 28.44 | 51.38 |
| AT3G13672.2 | Thale cress | nucleus | 35.17 | 47.33 |
| VIT_15s0046g00380.t01 | Wine grape | cytosol | 35.17 | 46.18 |
| VIT_00s0663g00030.t01 | Wine grape | cytosol, extracellular, nucleus | 14.68 | 45.28 |
| VIT_00s0726g00020.t01 | Wine grape | extracellular | 15.9 | 45.22 |
| AT5G37870.1 | Thale cress | nucleus | 20.18 | 23.49 |
| AT5G37910.1 | Thale cress | nucleus | 19.27 | 22.83 |
| AT5G37890.1 | Thale cress | nucleus | 19.88 | 22.73 |
| AT1G66630.1 | Thale cress | cytosol | 18.96 | 20.46 |
| AT5G37930.1 | Thale cress | nucleus | 20.8 | 19.48 |
| AT1G66650.1 | Thale cress | nucleus | 19.27 | 19.15 |
| AT5G62800.1 | Thale cress | nucleus | 20.18 | 18.97 |
| AT1G66620.1 | Thale cress | nucleus | 18.04 | 18.85 |
| AT5G37900.1 | Thale cress | nucleus | 13.46 | 18.26 |
| AT1G66610.1 | Thale cress | nucleus | 19.88 | 17.76 |
| AT1G66660.2 | Thale cress | nucleus | 18.65 | 17.53 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:828901 | UniProt:A0A178UWK8 |
| ProteinID:AEE85404.1 | ArrayExpress:AT4G27880 | EnsemblPlantsGene:AT4G27880 | RefSeq:AT4G27880 | TAIR:AT4G27880 | RefSeq:AT4G27880-TAIR-G |
| EnsemblPlants:AT4G27880.1 | TAIR:AT4G27880.1 | Unigene:At.32065 | UniProt:B3LF90 | EMBL:BT033078 | EMBL:BX826742 |
| ProteinID:CAB43976.1 | ProteinID:CAB81437.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | RefSeq:NP_194517.1 |
| ProteinID:OAO97282.1 | PFAM:PF03145 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF42 | UniProt:Q9STN8 | InterPro:SINA-like |
| SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI00000AB372 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
Coordinates
chr4:+:13883167..13885063
Molecular Weight (calculated)
36576.4 Da
IEP (calculated)
7.180
GRAVY (calculated)
-0.370
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.