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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:mitochondrion, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026301.1-P Field mustard nucleus 100.0 100.0
CDY19018 Canola nucleus 99.07 99.07
CDY14268 Canola nucleus 91.93 92.5
CDX97399 Canola nucleus 91.61 91.9
CDX92848 Canola nucleus 86.34 91.15
AT4G27880.1 Thale cress nucleus 90.68 89.3
VIT_02s0025g01660.t01 Wine grape cytosol 80.12 81.65
PGSC0003DMT400023575 Potato cytosol 79.19 81.21
Solyc03g083270.2.1 Tomato cytosol 78.88 81.15
PGSC0003DMT400050427 Potato cytosol 77.95 79.68
Solyc06g051980.2.1 Tomato cytosol 77.33 79.05
CDY25077 Canola nucleus 77.95 77.71
CDX67865 Canola nucleus 77.95 77.71
KRG97189 Soybean nucleus 75.47 77.39
GSMUA_Achr5P06970_001 Banana cytosol 77.33 76.85
CDY43950 Canola nucleus 76.09 75.38
CDX89132 Canola cytosol 76.09 75.15
KRH68916 Soybean nucleus 74.22 72.87
CDY56244 Canola cytosol 63.35 70.59
CDY64066 Canola cytosol 23.6 70.37
CDY57244 Canola cytosol 66.77 69.81
CDX88968 Canola cytosol 67.39 69.77
CDY67927 Canola cytosol 67.39 69.77
CDX71977 Canola cytosol 66.77 69.35
CDY06889 Canola cytosol 62.73 68.01
CDY06056 Canola cytosol 55.28 67.94
CDY14808 Canola cytosol 63.66 67.88
CDY35390 Canola nucleus 62.42 65.47
CDY22549 Canola nucleus 62.73 65.37
CDY67899 Canola cytosol, plastid 30.75 59.64
CDY67278 Canola cytosol 14.6 58.02
VIT_15s0046g00400.t01 Wine grape cytosol 46.27 55.19
VIT_00s0426g00040.t01 Wine grape mitochondrion 40.68 54.36
CDX75727 Canola cytosol 35.4 53.27
CDY38819 Canola nucleus 31.68 52.58
CDY67900 Canola cytosol, endoplasmic reticulum, plastid 45.03 52.54
VIT_15s0046g00390.t01 Wine grape nucleus 43.48 52.04
CDX82523 Canola cytosol 34.47 51.87
VIT_15s0046g00410.t01 Wine grape cytosol 28.26 50.28
CDY14650 Canola cytosol, nucleus, plastid 34.16 49.77
VIT_00s0663g00030.t01 Wine grape cytosol, extracellular, nucleus 15.22 46.23
VIT_15s0046g00380.t01 Wine grape cytosol 35.09 45.38
VIT_00s0726g00020.t01 Wine grape extracellular 16.15 45.22
CDY11709 Canola nucleus 14.29 27.88
CDY10787 Canola plastid 21.74 24.22
CDY01699 Canola nucleus, plastid 21.12 24.11
CDY52473 Canola nucleus 20.81 23.59
CDX99687 Canola nucleus 20.5 23.32
CDY12498 Canola nucleus 18.63 22.06
CDY25763 Canola nucleus 18.32 21.69
CDY47873 Canola nucleus 21.12 20.99
CDY27008 Canola nucleus 21.43 20.97
CDY36209 Canola plastid 13.04 19.91
CDY01695 Canola nucleus 18.94 19.74
CDY01756 Canola cytosol, nucleus, plastid 17.7 19.19
CDX96138 Canola nucleus 19.88 18.82
CDX83363 Canola cytosol, nucleus, plasma membrane 10.25 18.44
CDX95911 Canola cytosol, nucleus, plastid 16.77 18.37
CDY36211 Canola nucleus 20.5 18.28
CDY70665 Canola nucleus 17.39 17.28
CDX96140 Canola cytosol, nucleus, plastid 18.32 16.91
CDY01757 Canola cytosol 2.48 15.09
CDY01758 Canola cytosol 12.42 9.15
Protein Annotations
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-MapMan:19.2.2.1.5.3.5Gene3D:2.60.210.10Gene3D:3.30.40.10
InterPro:7-in-absentia-prot_TRAF-domGO:A0A078DJ21EnsemblPlants:CDX89221ProteinID:CDX89221ProteinID:CDX89221.1GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006511GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009056
GO:GO:0009987GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00149408001InterPro:IPR001841InterPro:IPR008974InterPro:IPR013010
InterPro:IPR013083PFAM:PF03145PFscan:PS50089PFscan:PS51081PANTHER:PTHR10315PANTHER:PTHR10315:SF42
InterPro:SINA-likeSUPFAM:SSF49599SUPFAM:SSF57850InterPro:TRAF-likeUniPathway:UPA00143UniParc:UPI0002543F21
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDInterPro:Znf_SIAH:::
Description
BnaA01g16720D
Coordinates
chrLK031858:-:227367..229044
Molecular Weight (calculated)
36217.1 Da
IEP (calculated)
7.204
GRAVY (calculated)
-0.381
Length
322 amino acids
Sequence
(BLAST)
001: MDMDSMESST RSVQNDEIHH NGTFHFSSTK SHGGGGAASP AVVTNIVGPT ATSVYELLEC PVCTCSMYPP IHQCHNGHTL CSTCKVRVHN RCPTCRQELG
101: DIRCLALEKV AESLELPCKF YNLGCPEIFP YYSKLKHESL CNFRPYGCPY AGSECGVVGD IPFLVSHLRD DHKVDMHAGS TFNHRYVKSN PREVENATWM
201: LTVFHCFGQY FCLHFEAFQL GMGPVYMAFL RFMGDEEEAR SYSYSLEVGG SGRKLTWEGT PRSIRDSHRK VRDSNDGLII QRNMALFFSG GDRKELKLRV
301: TGKIWKEQHS PDSGLFMPNL SS
Best Arabidopsis Sequence Match ( AT4G27880.1 )
(BLAST)
001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS
Arabidopsis Description
SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.