Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028395.1-P | Field mustard | nucleus | 99.38 | 99.38 |
| CDY27008 | Canola | nucleus | 96.3 | 94.83 |
| AT5G37930.1 | Thale cress | nucleus | 71.3 | 66.19 |
| CDY12498 | Canola | nucleus | 44.75 | 53.31 |
| CDY25763 | Canola | nucleus | 44.44 | 52.94 |
| CDY11709 | Canola | nucleus | 23.15 | 45.45 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 12.65 | 45.05 |
| CDY01699 | Canola | nucleus, plastid | 35.19 | 40.43 |
| CDY52473 | Canola | nucleus | 34.88 | 39.79 |
| CDX99687 | Canola | nucleus | 34.57 | 39.58 |
| CDY70665 | Canola | nucleus | 38.89 | 38.89 |
| CDY36209 | Canola | plastid | 24.69 | 37.91 |
| CDY10787 | Canola | plastid | 33.64 | 37.72 |
| KRH58384 | Soybean | nucleus | 35.49 | 35.94 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 38.58 | 35.82 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 32.41 | 35.35 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 31.79 | 35.03 |
| KRH42263 | Soybean | nucleus | 34.26 | 34.69 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 19.14 | 34.64 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 21.3 | 34.5 |
| CDY01695 | Canola | nucleus | 31.79 | 33.33 |
| CDX96138 | Canola | nucleus | 33.95 | 32.35 |
| CDY36211 | Canola | nucleus | 35.49 | 31.86 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 20.99 | 31.78 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.3 | 31.22 |
| Solyc03g034460.2.1 | Tomato | nucleus | 33.02 | 29.72 |
| PGSC0003DMT400043050 | Potato | nucleus | 34.88 | 29.66 |
| Solyc03g042550.1.1 | Tomato | nucleus | 32.1 | 28.89 |
| Solyc03g034450.2.1 | Tomato | nucleus | 33.33 | 27.55 |
| Solyc03g042520.1.1 | Tomato | nucleus | 26.23 | 27.42 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 22.84 | 27.01 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 21.91 | 26.69 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 23.15 | 26.6 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 23.15 | 26.6 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 22.53 | 26.55 |
| CDY01757 | Canola | cytosol | 4.32 | 26.42 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 22.22 | 25.99 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 22.53 | 25.98 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 21.91 | 25.91 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 21.91 | 25.91 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 22.53 | 25.89 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 21.91 | 25.82 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 21.91 | 25.82 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 20.06 | 25.79 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 21.6 | 25.55 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 25.93 | 25.38 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 25.62 | 25.3 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 20.99 | 25.28 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 20.68 | 25.19 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 21.6 | 25.18 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 21.91 | 25.18 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.2 | 25.0 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 20.68 | 25.0 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 20.99 | 24.82 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 22.22 | 24.66 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 22.22 | 24.66 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 22.22 | 24.57 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 25.31 | 24.4 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 21.3 | 24.3 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 22.53 | 24.25 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 22.84 | 24.1 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 22.84 | 24.1 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 22.22 | 24.0 |
| KXG37941 | Sorghum | cytosol | 20.68 | 23.93 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 21.91 | 23.91 |
| Zm00001d041049_P001 | Maize | nucleus | 24.07 | 23.85 |
| OQU78944 | Sorghum | nucleus | 23.77 | 23.62 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 21.6 | 23.57 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 21.6 | 23.57 |
| CDY67278 | Canola | cytosol | 5.86 | 23.46 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 21.6 | 23.33 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 25.62 | 23.18 |
| TraesCSU01G045900.1 | Wheat | cytosol | 21.3 | 23.08 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 19.14 | 23.05 |
| KXG32014 | Sorghum | nucleus | 15.43 | 22.73 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 18.52 | 22.64 |
| KXG32009 | Sorghum | nucleus | 20.68 | 22.64 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 17.59 | 22.53 |
| CDX97399 | Canola | nucleus | 22.22 | 22.43 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 20.68 | 22.41 |
| OQU77422 | Sorghum | cytosol | 19.75 | 22.38 |
| CDX92848 | Canola | nucleus | 20.68 | 21.97 |
| CDY14268 | Canola | nucleus | 21.6 | 21.88 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.67 | 21.86 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 22.53 | 21.79 |
| CDY57244 | Canola | cytosol | 20.68 | 21.75 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.99 | 21.59 |
| CDX88968 | Canola | cytosol | 20.68 | 21.54 |
| CDY67927 | Canola | cytosol | 20.68 | 21.54 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 22.53 | 21.53 |
| CDY56244 | Canola | cytosol | 19.14 | 21.45 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 18.52 | 21.43 |
| CDX71977 | Canola | cytosol | 20.37 | 21.29 |
| CDY43950 | Canola | nucleus | 21.3 | 21.23 |
| CDX89221 | Canola | nucleus | 20.99 | 21.12 |
| CDY19018 | Canola | nucleus | 20.99 | 21.12 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 21.3 | 21.1 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 21.6 | 21.08 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 18.83 | 20.89 |
| CDY06889 | Canola | cytosol | 19.14 | 20.88 |
| CDX89132 | Canola | cytosol | 20.99 | 20.86 |
| CDY35390 | Canola | nucleus | 19.75 | 20.85 |
| EES17731 | Sorghum | nucleus | 22.22 | 20.81 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 22.53 | 20.74 |
| CDY22549 | Canola | nucleus | 19.75 | 20.71 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 18.52 | 20.69 |
| CDY14808 | Canola | cytosol | 19.14 | 20.53 |
| CDX67865 | Canola | nucleus | 20.37 | 20.43 |
| CDY25077 | Canola | nucleus | 20.37 | 20.43 |
| EES00387 | Sorghum | nucleus | 19.75 | 20.06 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 17.28 | 20.0 |
| CDY06056 | Canola | cytosol | 16.05 | 19.85 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 20.68 | 19.71 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 20.68 | 19.71 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 16.98 | 19.57 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.04 | 19.5 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 20.37 | 19.41 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 19.75 | 18.77 |
| OQU86453 | Sorghum | cytosol | 12.35 | 18.69 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 20.37 | 18.64 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 20.99 | 18.13 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 20.99 | 18.13 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 20.37 | 18.08 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 20.37 | 18.08 |
| TraesCSU01G021700.1 | Wheat | nucleus | 20.37 | 18.08 |
| EES17735 | Sorghum | mitochondrion | 25.0 | 18.04 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 20.68 | 17.96 |
| KXG21322 | Sorghum | nucleus | 20.68 | 17.91 |
| CDY01758 | Canola | cytosol | 24.07 | 17.85 |
| HORVU2Hr1G118840.1 | Barley | plastid | 20.37 | 17.79 |
| TraesCS1A01G070000.1 | Wheat | plastid | 13.27 | 17.7 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 20.37 | 17.28 |
| OQU77425 | Sorghum | nucleus | 19.75 | 17.02 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 16.98 | 16.67 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 23.15 | 16.34 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 22.84 | 16.23 |
| CDX75727 | Canola | cytosol | 10.49 | 15.89 |
| TraesCSU01G231400.1 | Wheat | nucleus | 16.67 | 15.61 |
| CDX82523 | Canola | cytosol | 10.19 | 15.42 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 19.14 | 15.31 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 21.91 | 15.3 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 10.19 | 14.93 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.96 | 14.74 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 12.35 | 14.49 |
| EES02574 | Sorghum | nucleus | 18.21 | 13.17 |
| CDY38819 | Canola | nucleus | 6.79 | 11.34 |
| CDY64066 | Canola | cytosol | 3.4 | 10.19 |
| CDY67899 | Canola | cytosol, plastid | 4.94 | 9.64 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.62 | 2.02 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078IFB0 | UniProt:A0A078IFB0 | EnsemblPlants:CDY47873 | ProteinID:CDY47873 | ProteinID:CDY47873.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00088378001 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EEBB13 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
BnaA07g14180DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078IFB0]
Coordinates
chrLK032743:+:12550..14819
Molecular Weight (calculated)
36044.9 Da
IEP (calculated)
5.035
GRAVY (calculated)
-0.273
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MARFSVSGGD DGEGSSNHQS RKRQRLPSID EDEETAGSSG EEDEEDDRQI ESMSDDSERE VSIEEARRIA ADPVTSKESS LSVTLLDPDV LDCPICCEPL
101: KAPIFQCDNG HLACSMCCTK VRNICPSCTL PVGYIRCRAM EKVIETSRVS CTNAKYGCKE RMLYVNRFSH EKLCVFAPCS CPVLDCNYTG YYKDLNSHVR
201: AKHKDEVVPF VWDVSVTIRL DKTTILQEEK DGEVMVVQVF RGLHVVYVVV TCIAPSAREV GCFSYYLVTV PLAVDGSLVQ RSMMKNVQKL SNEQPEDGFM
301: VIPSYMLSGS SRILLGRGRA YGHA
101: KAPIFQCDNG HLACSMCCTK VRNICPSCTL PVGYIRCRAM EKVIETSRVS CTNAKYGCKE RMLYVNRFSH EKLCVFAPCS CPVLDCNYTG YYKDLNSHVR
201: AKHKDEVVPF VWDVSVTIRL DKTTILQEEK DGEVMVVQVF RGLHVVYVVV TCIAPSAREV GCFSYYLVTV PLAVDGSLVQ RSMMKNVQKL SNEQPEDGFM
301: VIPSYMLSGS SRILLGRGRA YGHA
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.