Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G504900.1 | Wheat | nucleus | 86.33 | 87.59 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 80.58 | 81.45 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 62.59 | 61.7 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 64.75 | 61.43 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 64.03 | 60.96 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 53.24 | 55.64 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 51.44 | 51.62 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 35.25 | 35.77 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 35.97 | 35.46 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 34.89 | 35.4 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 35.25 | 34.88 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 36.33 | 34.59 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 35.61 | 33.9 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 34.53 | 33.8 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 23.38 | 32.5 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 28.42 | 31.23 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 34.17 | 30.94 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 26.98 | 30.36 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 31.3 | 28.9 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 30.58 | 28.62 |
| CDY11709 | Canola | nucleus | 16.91 | 28.48 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.94 | 27.6 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 32.73 | 26.76 |
| CDY01699 | Canola | nucleus, plastid | 26.26 | 25.89 |
| CDY12498 | Canola | nucleus | 25.18 | 25.74 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 24.82 | 25.65 |
| CDY36209 | Canola | plastid | 19.42 | 25.59 |
| CDX99687 | Canola | nucleus | 25.9 | 25.44 |
| Bra012354.1-P | Field mustard | cytosol | 24.82 | 25.37 |
| CDY25763 | Canola | nucleus | 24.82 | 25.37 |
| Bra025434.1-P | Field mustard | nucleus | 25.9 | 25.35 |
| CDY52473 | Canola | nucleus | 25.9 | 25.35 |
| AT5G37870.1 | Thale cress | nucleus | 25.54 | 25.27 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 26.62 | 24.92 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 26.26 | 24.83 |
| Bra000425.1-P | Field mustard | nucleus | 24.82 | 24.38 |
| KRH58384 | Soybean | nucleus | 28.06 | 24.38 |
| KRH42263 | Soybean | nucleus | 27.7 | 24.06 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.83 | 23.91 |
| AT5G37890.1 | Thale cress | nucleus | 24.46 | 23.78 |
| Bra022858.1-P | Field mustard | nucleus | 25.9 | 23.68 |
| AT1G66620.1 | Thale cress | nucleus | 26.62 | 23.64 |
| AT5G37910.1 | Thale cress | nucleus | 23.38 | 23.55 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.91 | 23.5 |
| AT1G66630.1 | Thale cress | cytosol | 25.18 | 23.1 |
| Bra004402.1-P | Field mustard | nucleus | 26.26 | 23.03 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 22.66 | 22.99 |
| CDY10787 | Canola | plastid | 23.74 | 22.84 |
| Bra018266.1-P | Field mustard | plastid | 23.74 | 22.84 |
| AT5G37900.1 | Thale cress | nucleus | 19.78 | 22.82 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 22.3 | 22.79 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 26.62 | 22.56 |
| CDY47873 | Canola | nucleus | 25.18 | 21.6 |
| Bra028395.1-P | Field mustard | nucleus | 25.18 | 21.6 |
| Solyc03g034460.2.1 | Tomato | nucleus | 27.7 | 21.39 |
| Solyc03g042550.1.1 | Tomato | nucleus | 27.7 | 21.39 |
| CDY01695 | Canola | nucleus | 23.74 | 21.36 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 35.61 | 21.34 |
| Bra004174.1-P | Field mustard | nucleus | 26.98 | 21.25 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 26.62 | 21.2 |
| TraesCS3B01G019600.1 | Wheat | plastid | 23.74 | 20.89 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 13.31 | 20.67 |
| CDY27008 | Canola | nucleus | 24.46 | 20.67 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 29.86 | 20.49 |
| AT5G62800.1 | Thale cress | nucleus | 25.54 | 20.4 |
| AT5G37930.1 | Thale cress | nucleus | 25.54 | 20.34 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 22.66 | 20.26 |
| AT1G66650.1 | Thale cress | nucleus | 23.74 | 20.06 |
| CDY70665 | Canola | nucleus | 22.66 | 19.44 |
| PGSC0003DMT400043050 | Potato | nucleus | 26.62 | 19.42 |
| Solyc03g042520.1.1 | Tomato | nucleus | 21.22 | 19.03 |
| Bra019710.1-P | Field mustard | nucleus | 23.38 | 19.01 |
| AT1G66610.1 | Thale cress | nucleus | 24.46 | 18.58 |
| Solyc03g034450.2.1 | Tomato | nucleus | 25.9 | 18.37 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 20.86 | 17.74 |
| AT1G66660.2 | Thale cress | nucleus | 21.94 | 17.53 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 23.38 | 17.33 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 21.22 | 17.3 |
| Bra004176.1-P | Field mustard | nucleus | 20.5 | 16.91 |
| CDX96138 | Canola | nucleus | 20.5 | 16.76 |
| CDY36211 | Canola | nucleus | 21.22 | 16.34 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 20.5 | 16.29 |
| TraesCS1B01G152800.1 | Wheat | plastid | 20.14 | 13.76 |
| CDY01758 | Canola | cytosol | 16.91 | 10.76 |
| CDY01757 | Canola | cytosol | 1.44 | 7.55 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G560800 | EnsemblPlants:TraesCS3B01G560800.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:794632929..794634205
Molecular Weight (calculated)
30971.3 Da
IEP (calculated)
7.186
GRAVY (calculated)
-0.232
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVQQQQQET NGKEAEEGGV GKRRKVATDV TMDLDILDCP VCFLPLRPPI FQCTLGHAIC SSCRDKLQDK CCLCSLPTVY NRCHMVENVV ESIKLACSNS
101: SHGCTARITY YQKEDHEKGC QHAPCFCPET GCSFSGPTKV LLEHFLGEHD WCYGEKDLRY GKTYRITLLG VQGPTVLMGN DGHLFLVNMT MESLGGVISV
201: CCVEPHISAS RFKCRLALLC GEQSYSQTTE FLTTSTNLRD GFPKDCFPLL VPKVFAWRHR YKPHSHGVCD PQATVSTM
101: SHGCTARITY YQKEDHEKGC QHAPCFCPET GCSFSGPTKV LLEHFLGEHD WCYGEKDLRY GKTYRITLLG VQGPTVLMGN DGHLFLVNMT MESLGGVISV
201: CCVEPHISAS RFKCRLALLC GEQSYSQTTE FLTTSTNLRD GFPKDCFPLL VPKVFAWRHR YKPHSHGVCD PQATVSTM
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.