Factsheet for TraesCS3B01G018000.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G027900.1	Wheat	cytosol	91.91	91.91
TraesCS3D01G018100.1	Wheat	cytosol	88.97	90.3
TraesCS3B01G442300.1	Wheat	cytosol	72.06	71.53
TraesCS3B01G019600.1	Wheat	plastid	54.78	47.15
OQU86460	Sorghum	nucleus	40.81	33.23
KXG32028	Sorghum	plastid	38.97	31.55
TraesCS3B01G054400.1	Wheat	cytosol	25.0	22.9
TraesCS3B01G028900.1	Wheat	cytosol	25.0	22.59
TraesCS3B01G560800.1	Wheat	nucleus	22.79	22.3
TraesCS3B01G033800.1	Wheat	nucleus	22.06	21.9
TraesCS3B01G050100.1	Wheat	cytosol	22.06	21.9
TraesCS3B01G053500.1	Wheat	cytosol	22.06	21.28
TraesCS3B01G052700.1	Wheat	nucleus	19.49	20.95
TraesCS3B01G052800.1	Wheat	cytosol	21.69	20.92
TraesCS3B01G032100.1	Wheat	cytosol	21.69	20.77
TraesCS3B01G074800.1	Wheat	cytosol	20.96	20.58
TraesCS3B01G053400.1	Wheat	cytosol, nucleus, plastid	22.06	20.48
TraesCS3B01G053000.1	Wheat	cytosol	20.96	20.28
TraesCS3B01G050900.1	Wheat	cytosol	21.69	20.21
TraesCS3B01G031200.1	Wheat	nucleus	21.69	20.21
TraesCS4B01G363200.1	Wheat	nucleus	23.9	19.82
TraesCS3B01G050700.1	Wheat	nucleus	22.06	19.54
TraesCS3B01G033700.1	Wheat	nucleus	19.85	18.49
TraesCS6B01G114800.1	Wheat	nucleus	20.96	18.33
TraesCS3B01G032300.1	Wheat	cytosol	13.24	18.0
TraesCS7B01G244800.1	Wheat	cytosol, nucleus, peroxisome	22.43	17.89
TraesCS3B01G185000.1	Wheat	cytoskeleton, nucleus, plasma membrane	20.96	17.43
TraesCS3B01G050200.1	Wheat	nucleus	15.81	17.41
TraesCS3B01G052400.1	Wheat	nucleus	20.96	16.76
TraesCS2B01G151100.1	Wheat	plasma membrane	21.32	16.57
TraesCS3B01G031100.1	Wheat	nucleus	21.69	14.57
TraesCS1B01G152800.1	Wheat	plastid	21.32	14.25
TraesCS3B01G052300.1	Wheat	nucleus	23.9	14.01
TraesCS2B01G594500.1	Wheat	nucleus, plastid	18.75	13.6

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF35	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G018000	EnsemblPlants:TraesCS3B01G018000.2
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:7382509..7384564

Molecular Weight (calculated)

29682.8 Da

IEP (calculated)

7.768

GRAVY (calculated)

-0.092

Length

272 amino acids

Sequence
(BLAST)

001: MDKKAGAERA SAEENCSGKK AKVTVEAEAA VSTITLNVNP KLLECSGCWS PLVPPIFQCT NGHITCLKCC ADLKHSSCGL CALERTGCHA WGRILGGLTM
101: PCSFQGHGCT ETIRFTEKLA HEESCLHAPC HCPIAGCHPY HGRSLRDHIN LEHATIQYTR VTARSLYPLS MRNDEPARLV SLGSRAVFLL VVDRSIPSGR
201: ALSLIHLVSD PIEKEDFKYK IEVHTRIGIL SVSGSETPSV GRLTRTYQAG ALLFLSDAVW SPQDSPVYLE LK

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.