Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G033700.1 | Wheat | nucleus | 46.91 | 49.32 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 42.35 | 47.45 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 42.02 | 47.08 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 37.78 | 46.96 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 43.0 | 45.21 |
| KXG32009 | Sorghum | nucleus | 35.83 | 37.16 |
| Os01t0761900-00 | Rice | cytosol | 18.57 | 34.97 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 31.92 | 34.75 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 30.94 | 34.17 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 32.25 | 33.9 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 32.25 | 33.79 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 28.99 | 31.56 |
| Os01t0125500-00 | Rice | mitochondrion | 28.66 | 31.32 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 20.2 | 31.0 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 28.66 | 30.99 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 28.34 | 30.96 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 27.69 | 30.69 |
| CDY11709 | Canola | nucleus | 15.64 | 29.09 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 23.78 | 28.85 |
| CDY12498 | Canola | nucleus | 24.76 | 27.94 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.87 | 27.6 |
| CDY25763 | Canola | nucleus | 24.1 | 27.21 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 26.06 | 26.94 |
| Bra012354.1-P | Field mustard | cytosol | 23.78 | 26.84 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 29.32 | 26.47 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 25.73 | 26.25 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.61 | 25.5 |
| Bra025434.1-P | Field mustard | nucleus | 23.13 | 25.0 |
| AT5G37890.1 | Thale cress | nucleus | 23.13 | 24.83 |
| Bra000425.1-P | Field mustard | nucleus | 22.8 | 24.73 |
| CDY52473 | Canola | nucleus | 22.8 | 24.65 |
| CDY01695 | Canola | nucleus | 24.76 | 24.6 |
| CDX99687 | Canola | nucleus | 22.48 | 24.38 |
| AT5G37870.1 | Thale cress | nucleus | 22.15 | 24.2 |
| CDY01699 | Canola | nucleus, plastid | 21.82 | 23.76 |
| AT5G37910.1 | Thale cress | nucleus | 21.17 | 23.55 |
| KRH42263 | Soybean | nucleus | 24.43 | 23.44 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.01 | 23.37 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 20.85 | 23.36 |
| CDY10787 | Canola | plastid | 21.82 | 23.18 |
| Bra018266.1-P | Field mustard | plastid | 21.82 | 23.18 |
| KRH58384 | Soybean | nucleus | 24.1 | 23.12 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 20.2 | 23.05 |
| CDY47873 | Canola | nucleus | 24.1 | 22.84 |
| Bra028395.1-P | Field mustard | nucleus | 24.1 | 22.84 |
| CDY36209 | Canola | plastid | 15.64 | 22.75 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 24.1 | 22.56 |
| CDY27008 | Canola | nucleus | 24.1 | 22.49 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 13.03 | 22.35 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 19.54 | 22.06 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 20.85 | 21.55 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 20.52 | 21.43 |
| Solyc03g034460.2.1 | Tomato | nucleus | 25.08 | 21.39 |
| AT1G66650.1 | Thale cress | nucleus | 22.8 | 21.28 |
| AT1G66630.1 | Thale cress | cytosol | 20.85 | 21.12 |
| Bra022858.1-P | Field mustard | nucleus | 20.85 | 21.05 |
| AT1G66620.1 | Thale cress | nucleus | 21.17 | 20.77 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 27.36 | 20.74 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 31.27 | 20.69 |
| Bra004174.1-P | Field mustard | nucleus | 23.78 | 20.68 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 23.45 | 20.63 |
| Solyc03g042550.1.1 | Tomato | nucleus | 23.78 | 20.28 |
| Bra004402.1-P | Field mustard | nucleus | 20.52 | 19.87 |
| AT5G37930.1 | Thale cress | nucleus | 22.48 | 19.77 |
| CDY70665 | Canola | nucleus | 20.85 | 19.75 |
| AT5G37900.1 | Thale cress | nucleus | 15.31 | 19.5 |
| AT5G62800.1 | Thale cress | nucleus | 21.82 | 19.25 |
| Bra019710.1-P | Field mustard | nucleus | 21.17 | 19.01 |
| Bra004176.1-P | Field mustard | nucleus | 20.85 | 18.99 |
| Solyc03g034450.2.1 | Tomato | nucleus | 24.1 | 18.88 |
| CDX96138 | Canola | nucleus | 20.85 | 18.82 |
| Solyc03g042520.1.1 | Tomato | nucleus | 18.89 | 18.71 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 18.89 | 18.65 |
| PGSC0003DMT400043050 | Potato | nucleus | 22.8 | 18.37 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 19.54 | 18.35 |
| CDY36211 | Canola | nucleus | 21.17 | 18.01 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 21.82 | 17.87 |
| AT1G66610.1 | Thale cress | nucleus | 21.17 | 17.76 |
| TraesCS3B01G019600.1 | Wheat | plastid | 18.24 | 17.72 |
| AT1G66660.2 | Thale cress | nucleus | 19.87 | 17.53 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 19.22 | 17.3 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 18.57 | 16.29 |
| TraesCS1B01G152800.1 | Wheat | plastid | 19.54 | 14.74 |
| CDY01758 | Canola | cytosol | 13.03 | 9.15 |
| CDY01757 | Canola | cytosol | 0.98 | 5.66 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF35 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G050700 | EnsemblPlants:TraesCS3B01G050700.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:25283187..25285669
Molecular Weight (calculated)
33632.3 Da
IEP (calculated)
7.706
GRAVY (calculated)
-0.284
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDMAAPAAG ISGIIDPEVL DCTICFDPLQ PPVFQCAVGH VICSPCQGKL INKENCNTCS LPGGYNRCYA LEKILESLRI PCANAAYGCT VKTHYHEVED
101: HGKSCPHAPC FCPEPGCNFA GSTVALLAHL TGGHMWPSTE LEYNVKLTLE VKAGVHVLHR RDRSPFFLVK FTPAPPPYGS AASVLCVDPD ATATMEKGRK
201: FRCQLGSSNV DMDWQQYSRF QVRSTTLSDG WPPTEDGGSL YVAPSTESIT VSITKIMRDI CSLPARKNIR SQQLEHFCKR KSSNPDAKTF SQPRMGESTK
301: KQHISTM
101: HGKSCPHAPC FCPEPGCNFA GSTVALLAHL TGGHMWPSTE LEYNVKLTLE VKAGVHVLHR RDRSPFFLVK FTPAPPPYGS AASVLCVDPD ATATMEKGRK
201: FRCQLGSSNV DMDWQQYSRF QVRSTTLSDG WPPTEDGGSL YVAPSTESIT VSITKIMRDI CSLPARKNIR SQQLEHFCKR KSSNPDAKTF SQPRMGESTK
301: KQHISTM
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.