Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 98.13 | 98.13 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 97.6 | 98.12 |
| HORVU2Hr1G118840.1 | Barley | plastid | 92.53 | 93.53 |
| Os01t0123800-00 | Rice | nucleus | 35.47 | 34.46 |
| EES02574 | Sorghum | nucleus | 38.4 | 32.14 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 20.0 | 27.37 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 19.73 | 27.01 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 14.93 | 25.34 |
| CDY11709 | Canola | nucleus | 10.93 | 24.85 |
| AT5G37910.1 | Thale cress | nucleus | 18.13 | 24.64 |
| CDX99687 | Canola | nucleus | 18.4 | 24.38 |
| Bra025434.1-P | Field mustard | nucleus | 18.4 | 24.3 |
| CDY52473 | Canola | nucleus | 18.4 | 24.3 |
| AT5G37870.1 | Thale cress | nucleus | 18.13 | 24.2 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 18.13 | 24.11 |
| KRH42263 | Soybean | nucleus | 20.53 | 24.06 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.73 | 23.91 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 17.87 | 23.76 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 17.6 | 23.49 |
| KRH58384 | Soybean | nucleus | 20.0 | 23.44 |
| CDY01699 | Canola | nucleus, plastid | 17.6 | 23.4 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 17.33 | 23.38 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 18.13 | 23.29 |
| Bra000425.1-P | Field mustard | nucleus | 17.33 | 22.97 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 17.6 | 22.6 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 17.87 | 22.56 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 17.07 | 22.54 |
| Bra018266.1-P | Field mustard | plastid | 17.33 | 22.49 |
| CDY10787 | Canola | plastid | 17.33 | 22.49 |
| CDY12498 | Canola | nucleus | 16.27 | 22.43 |
| AT5G37900.1 | Thale cress | nucleus | 14.4 | 22.41 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 17.33 | 22.26 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 17.87 | 22.26 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 17.33 | 22.18 |
| CDY25763 | Canola | nucleus | 16.0 | 22.06 |
| AT5G37890.1 | Thale cress | nucleus | 16.8 | 22.03 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 17.87 | 21.82 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.4 | 21.79 |
| AT1G66630.1 | Thale cress | cytosol | 17.6 | 21.78 |
| Bra012354.1-P | Field mustard | cytosol | 15.73 | 21.69 |
| CDY01695 | Canola | nucleus | 17.87 | 21.68 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 11.47 | 21.5 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 14.13 | 21.46 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 14.4 | 21.34 |
| Bra022858.1-P | Field mustard | nucleus | 17.07 | 21.05 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 11.2 | 21.0 |
| CDY47873 | Canola | nucleus | 18.13 | 20.99 |
| Bra028395.1-P | Field mustard | nucleus | 18.13 | 20.99 |
| AT1G66650.1 | Thale cress | nucleus | 18.4 | 20.97 |
| CDY27008 | Canola | nucleus | 18.4 | 20.97 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 15.47 | 20.94 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 16.53 | 20.88 |
| Solyc03g034460.2.1 | Tomato | nucleus | 20.0 | 20.83 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 16.27 | 20.75 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.67 | 20.45 |
| CDY70665 | Canola | nucleus | 17.6 | 20.37 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.07 | 20.15 |
| AT1G66620.1 | Thale cress | nucleus | 16.8 | 20.13 |
| PGSC0003DMT400043050 | Potato | nucleus | 20.0 | 19.68 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 17.07 | 19.51 |
| Solyc03g042550.1.1 | Tomato | nucleus | 18.67 | 19.44 |
| Bra019710.1-P | Field mustard | nucleus | 17.6 | 19.3 |
| Bra004402.1-P | Field mustard | nucleus | 16.27 | 19.24 |
| AT5G37930.1 | Thale cress | nucleus | 17.87 | 19.2 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 13.87 | 18.98 |
| CDY36209 | Canola | plastid | 10.67 | 18.96 |
| AT1G66610.1 | Thale cress | nucleus | 18.4 | 18.85 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 13.6 | 18.75 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.47 | 18.71 |
| CDX96138 | Canola | nucleus | 16.8 | 18.53 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 16.8 | 18.53 |
| Bra004176.1-P | Field mustard | nucleus | 16.27 | 18.1 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 14.67 | 17.68 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 16.27 | 17.48 |
| AT5G62800.1 | Thale cress | nucleus | 16.0 | 17.24 |
| CDY36211 | Canola | nucleus | 16.53 | 17.17 |
| Bra004174.1-P | Field mustard | nucleus | 16.0 | 17.0 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 18.13 | 16.79 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 15.2 | 16.72 |
| AT1G66660.2 | Thale cress | nucleus | 15.47 | 16.67 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 14.13 | 16.21 |
| TraesCS3B01G019600.1 | Wheat | plastid | 13.6 | 16.14 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 13.87 | 14.86 |
| TraesCS1B01G152800.1 | Wheat | plastid | 14.67 | 13.51 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 16.53 | 13.36 |
| CDY01757 | Canola | cytosol | 1.33 | 9.43 |
| CDY01758 | Canola | cytosol | 9.6 | 8.24 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF44 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS2B01G594500 | EnsemblPlants:TraesCS2B01G594500.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2B:-:779101030..779102747
Molecular Weight (calculated)
42155.3 Da
IEP (calculated)
8.482
GRAVY (calculated)
-0.680
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSAAKRVG TPLADAEGSP KRPRSSRHPS LSPSPSQARS QAPSPSQSRS RSRSRSRLPL ARTSPPPYIG SPSYAPYDDR SPSRSRSRSY SRSRSRSRVS
101: EETDGNGRPV WRPHSYREHS GEHGDGEYSV RIGDYDRLFI CRSCHRMLSS PVYECPDGHV TCSRCRDNIG DNRCNYCAAN GIVRSRAVEE FLGRISFSCR
201: NQQYGCEVFL LHHEMRAHER TCHYDPCFCP VHRCGFAGPA YDLESHLATI HRWEVINFRY GESFQAPAFD SAIFRCEDYG ELFHISSSRE GLGTALSMIC
301: IRPDNAFEEE FTYELKMPVG GRRHRLQIQS TVWNTSLRYG IGEGSDVFLL VPDKLPGVEN GCAVEVCIRK VVAGN
101: EETDGNGRPV WRPHSYREHS GEHGDGEYSV RIGDYDRLFI CRSCHRMLSS PVYECPDGHV TCSRCRDNIG DNRCNYCAAN GIVRSRAVEE FLGRISFSCR
201: NQQYGCEVFL LHHEMRAHER TCHYDPCFCP VHRCGFAGPA YDLESHLATI HRWEVINFRY GESFQAPAFD SAIFRCEDYG ELFHISSSRE GLGTALSMIC
301: IRPDNAFEEE FTYELKMPVG GRRHRLQIQS TVWNTSLRYG IGEGSDVFLL VPDKLPGVEN GCAVEVCIRK VVAGN
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.