Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 93.26 | 92.76 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 93.53 | 92.53 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 92.99 | 92.0 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 43.13 | 57.14 |
| Os01t0123800-00 | Rice | nucleus | 34.77 | 33.42 |
| EES02574 | Sorghum | nucleus | 37.74 | 31.25 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 19.14 | 28.17 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 6.47 | 26.37 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 14.82 | 24.89 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 18.33 | 24.73 |
| AT5G37910.1 | Thale cress | nucleus | 17.79 | 23.91 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.86 | 23.91 |
| KRH42263 | Soybean | nucleus | 20.49 | 23.75 |
| CDY11709 | Canola | nucleus | 10.51 | 23.64 |
| CDY10787 | Canola | plastid | 18.33 | 23.53 |
| Bra018266.1-P | Field mustard | plastid | 18.33 | 23.53 |
| AT5G37870.1 | Thale cress | nucleus | 17.79 | 23.49 |
| KRH58384 | Soybean | nucleus | 20.22 | 23.44 |
| CDX99687 | Canola | nucleus | 17.79 | 23.32 |
| CDY52473 | Canola | nucleus | 17.79 | 23.24 |
| Bra025434.1-P | Field mustard | nucleus | 17.79 | 23.24 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 16.44 | 23.02 |
| Bra000425.1-P | Field mustard | nucleus | 17.25 | 22.61 |
| CDY01699 | Canola | nucleus, plastid | 16.98 | 22.34 |
| CDY12498 | Canola | nucleus | 16.17 | 22.06 |
| AT5G37900.1 | Thale cress | nucleus | 14.29 | 21.99 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.51 | 21.79 |
| CDY25763 | Canola | nucleus | 15.9 | 21.69 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 17.52 | 21.67 |
| AT1G66630.1 | Thale cress | cytosol | 17.52 | 21.45 |
| CDY01695 | Canola | nucleus | 17.79 | 21.36 |
| Bra012354.1-P | Field mustard | cytosol | 15.63 | 21.32 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 15.63 | 20.71 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 11.59 | 20.67 |
| AT1G66650.1 | Thale cress | nucleus | 18.33 | 20.67 |
| AT5G37890.1 | Thale cress | nucleus | 15.9 | 20.63 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 16.44 | 20.54 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 11.05 | 20.5 |
| Bra022858.1-P | Field mustard | nucleus | 16.71 | 20.39 |
| CDY47873 | Canola | nucleus | 17.79 | 20.37 |
| Bra028395.1-P | Field mustard | nucleus | 17.79 | 20.37 |
| CDY27008 | Canola | nucleus | 18.06 | 20.36 |
| Solyc03g034460.2.1 | Tomato | nucleus | 19.68 | 20.28 |
| AT1G66620.1 | Thale cress | nucleus | 16.71 | 19.81 |
| CDY70665 | Canola | nucleus | 17.25 | 19.75 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.29 | 19.7 |
| Solyc03g034450.2.1 | Tomato | nucleus | 20.75 | 19.64 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 15.36 | 19.39 |
| PGSC0003DMT400043050 | Potato | nucleus | 19.68 | 19.16 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 15.36 | 19.0 |
| Solyc03g042550.1.1 | Tomato | nucleus | 18.33 | 18.89 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 17.25 | 18.77 |
| Bra019710.1-P | Field mustard | nucleus | 17.25 | 18.71 |
| AT5G37930.1 | Thale cress | nucleus | 17.52 | 18.62 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 16.98 | 18.58 |
| AT1G66610.1 | Thale cress | nucleus | 18.33 | 18.58 |
| CDY36209 | Canola | plastid | 10.51 | 18.48 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 14.29 | 18.47 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 14.02 | 18.25 |
| CDX96138 | Canola | nucleus | 16.71 | 18.24 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 17.52 | 18.16 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 16.17 | 18.07 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.09 | 18.06 |
| Bra004402.1-P | Field mustard | nucleus | 15.36 | 17.98 |
| Bra004176.1-P | Field mustard | nucleus | 16.17 | 17.8 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 16.17 | 17.19 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 14.29 | 17.04 |
| HORVU3Hr1G018420.2 | Barley | plastid | 14.56 | 17.03 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 15.09 | 16.97 |
| CDY36211 | Canola | nucleus | 16.44 | 16.9 |
| Bra004174.1-P | Field mustard | nucleus | 15.9 | 16.71 |
| AT1G66660.2 | Thale cress | nucleus | 15.63 | 16.67 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 14.56 | 16.51 |
| AT5G62800.1 | Thale cress | nucleus | 14.82 | 15.8 |
| HORVU1Hr1G033130.2 | Barley | plastid | 14.82 | 13.65 |
| HORVU2Hr1G022590.1 | Barley | nucleus | 13.75 | 13.46 |
| CDY01757 | Canola | cytosol | 1.35 | 9.43 |
| CDY01758 | Canola | cytosol | 9.16 | 7.78 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A287JMS4 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU2Hr1G118840 | EnsemblPlants:HORVU2Hr1G118840.1 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF44 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000B47AFD8 | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287JMS4]
Coordinates
chrchr2H:+:743454156..743456508
Molecular Weight (calculated)
41501.8 Da
IEP (calculated)
8.686
GRAVY (calculated)
-0.601
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRAAKRVG TPLADAQASP KRPRTSRHPS LSPSPSQARS QAPSPSQSRS RSRSRSRLPL ARTSSPSYVG SPVYAPYKDR SPSRSRSYSR SLSRVSEEMD
101: GNGRPVWRPH SYREHSGGHG DGEYSVRIGD YDRLFVCRSC HRMLSSPVYE VKPGHVTCST CRANIGDNRC NYCAANGCVR SRAVEEFLGR ISFSCRNQQY
201: GCEVFLLHHE MRAHERTCHY DPCFCPVHRC GFAGPAYDLE SHLATIHRWE VINFRYGESF EAPAFDSAIF RCEDYGELFH ISSSREGLGT ALSMICIRPD
301: NACEEEFTYE LKMPAGGRRH RLQIQSTVWN TSLRYGIGEG SDVFLLVPDK LPGVENGCAV EVCIRKVVSG N
101: GNGRPVWRPH SYREHSGGHG DGEYSVRIGD YDRLFVCRSC HRMLSSPVYE VKPGHVTCST CRANIGDNRC NYCAANGCVR SRAVEEFLGR ISFSCRNQQY
201: GCEVFLLHHE MRAHERTCHY DPCFCPVHRC GFAGPAYDLE SHLATIHRWE VINFRYGESF EAPAFDSAIF RCEDYGELFH ISSSREGLGT ALSMICIRPD
301: NACEEEFTYE LKMPAGGRRH RLQIQSTVWN TSLRYGIGEG SDVFLLVPDK LPGVENGCAV EVCIRKVVSG N
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.