Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 49.7 | 58.57 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 44.55 | 58.1 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 10.91 | 39.56 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 30.61 | 38.11 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 28.48 | 28.31 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 25.45 | 28.0 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 21.21 | 27.78 |
| CDY11709 | Canola | nucleus | 13.33 | 26.67 |
| EES00387 | Sorghum | nucleus | 25.76 | 26.65 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 20.91 | 25.09 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 21.82 | 24.0 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 24.24 | 23.6 |
| CDY36209 | Canola | plastid | 14.24 | 22.27 |
| CDY25763 | Canola | nucleus | 17.88 | 21.69 |
| CDY12498 | Canola | nucleus | 17.88 | 21.69 |
| Bra012354.1-P | Field mustard | cytosol | 17.88 | 21.69 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 17.58 | 21.56 |
| AT1G66620.1 | Thale cress | nucleus | 20.0 | 21.09 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.21 | 20.11 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 17.27 | 20.0 |
| AT1G66630.1 | Thale cress | cytosol | 17.88 | 19.47 |
| CDX99687 | Canola | nucleus | 16.67 | 19.43 |
| Bra022858.1-P | Field mustard | nucleus | 17.88 | 19.41 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.27 | 19.39 |
| Bra025434.1-P | Field mustard | nucleus | 16.67 | 19.37 |
| CDY52473 | Canola | nucleus | 16.67 | 19.37 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 17.27 | 19.19 |
| CDY01699 | Canola | nucleus, plastid | 16.36 | 19.15 |
| AT5G37900.1 | Thale cress | nucleus | 13.94 | 19.09 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 12.73 | 19.0 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 20.0 | 18.91 |
| CDY01695 | Canola | nucleus | 17.58 | 18.77 |
| Bra004174.1-P | Field mustard | nucleus | 20.0 | 18.7 |
| CDY10787 | Canola | plastid | 16.36 | 18.69 |
| Bra018266.1-P | Field mustard | plastid | 16.36 | 18.69 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 15.76 | 18.57 |
| KRH58384 | Soybean | nucleus | 17.88 | 18.44 |
| Bra000425.1-P | Field mustard | nucleus | 15.76 | 18.37 |
| Bra004402.1-P | Field mustard | nucleus | 17.58 | 18.3 |
| KRH42263 | Soybean | nucleus | 17.58 | 18.12 |
| AT5G37870.1 | Thale cress | nucleus | 15.15 | 17.79 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 18.18 | 17.6 |
| CDY27008 | Canola | nucleus | 16.97 | 17.02 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 10.3 | 17.0 |
| CDY47873 | Canola | nucleus | 16.67 | 16.98 |
| Bra028395.1-P | Field mustard | nucleus | 16.67 | 16.98 |
| AT5G37890.1 | Thale cress | nucleus | 14.55 | 16.78 |
| AT1G66610.1 | Thale cress | nucleus | 18.48 | 16.67 |
| AT5G37910.1 | Thale cress | nucleus | 13.94 | 16.67 |
| AT1G66650.1 | Thale cress | nucleus | 16.36 | 16.41 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 8.79 | 16.2 |
| Solyc03g034460.2.1 | Tomato | nucleus | 17.58 | 16.11 |
| AT1G66660.2 | Thale cress | nucleus | 16.97 | 16.09 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 13.94 | 16.03 |
| PGSC0003DMT400043050 | Potato | nucleus | 18.18 | 15.75 |
| CDY70665 | Canola | nucleus | 15.45 | 15.74 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 14.55 | 15.43 |
| Solyc03g042550.1.1 | Tomato | nucleus | 16.67 | 15.28 |
| Bra019710.1-P | Field mustard | nucleus | 15.76 | 15.2 |
| AT5G37930.1 | Thale cress | nucleus | 16.06 | 15.19 |
| HORVU2Hr1G118840.1 | Barley | plastid | 16.97 | 15.09 |
| Solyc03g034450.2.1 | Tomato | nucleus | 17.27 | 14.54 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 15.76 | 14.53 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 9.09 | 14.42 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 14.24 | 14.37 |
| HORVU3Hr1G018420.2 | Barley | plastid | 13.33 | 13.88 |
| AT5G62800.1 | Thale cress | nucleus | 14.55 | 13.79 |
| Bra004176.1-P | Field mustard | nucleus | 13.94 | 13.65 |
| Solyc03g042520.1.1 | Tomato | nucleus | 12.73 | 13.55 |
| CDX96138 | Canola | nucleus | 13.94 | 13.53 |
| HORVU2Hr1G022590.1 | Barley | nucleus | 15.45 | 13.46 |
| CDY01757 | Canola | cytosol | 2.12 | 13.21 |
| CDY36211 | Canola | nucleus | 13.64 | 12.47 |
| HORVU1Hr1G033130.2 | Barley | plastid | 14.24 | 11.66 |
| CDY01758 | Canola | cytosol | 10.91 | 8.24 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A287DWT0 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU0Hr1G006130 | EnsemblPlants:HORVU0Hr1G006130.1 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI000B47ACDD | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : |
Description
No Description!
Coordinates
chrchrUn:+:33027071..33028855
Molecular Weight (calculated)
37159.3 Da
IEP (calculated)
4.706
GRAVY (calculated)
-0.303
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: SLQATNCAGR GANRGPNHRR RRPSFQLPLH SRLVLEALAL MEAKSDIINK EGEGKQNVTM RMDVFNCSIC SKPLGPPIFQ CSKGNSICSA CCEQLPESKR
101: AAVHRCYIME RVVDNMFVSC KHGCGRKMTY YRQDTHEREC PIGPCMCPVS GCGFVAPAVV LLDHLTTLHK LPTTQVELFM MFHLPVQAGS QVLCSRNGRL
201: FLLEMASLGS FGHAVFLVCV RPETPRATVD AFVEFSCFEG HFHASKLKII PDGEPRQCLC VVPAGREISV HIGISIWMEY LDNDELQEEE EKEMDELDDA
301: FQEFDYDFDQ DEEDDAVQEY GSDFDEEEDD
101: AAVHRCYIME RVVDNMFVSC KHGCGRKMTY YRQDTHEREC PIGPCMCPVS GCGFVAPAVV LLDHLTTLHK LPTTQVELFM MFHLPVQAGS QVLCSRNGRL
201: FLLEMASLGS FGHAVFLVCV RPETPRATVD AFVEFSCFEG HFHASKLKII PDGEPRQCLC VVPAGREISV HIGISIWMEY LDNDELQEEE EKEMDELDDA
301: FQEFDYDFDQ DEEDDAVQEY GSDFDEEEDD
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.